A comparison is made between two variable flavor number schemes which describe charm quark production in deep inelastic electron-proton scattering. In these schemes the coefficient functions are derived from mass factorization of the heavy quark coefficient functions presented in a fixed flavor number scheme. Since the coefficient functions in the variable flavor number schemes have to be finite in the limit m-o we have defined a prescription for those processes where the virtual photon is attached to a light quark. Furthermore one has to construct a parton density set with four active flavors (u,d,s,c) out of a set which only contains three light the two sets are discontinuous at mu=m(c) which follows from mass factorization of flavors (u,d,s). In order alpha(s)(2) the two sets are discontinuous at mu = m(c) which follows from mass factorization of the heavy quark coefficient functions. The charm component of the structure function F-2a- is insensitive to the different variable favor number schemes. In particular in the threshold region they both agree with the description in fixed order perturbation theory presented in a three flavor scheme. However one version does not lead to a correct description of the threshold behavior of the longitudinal structure function F-L,F-c. This happens when one requires a non-vanishing zeroth order longitudinal coefficient function.
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