相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Ecological Aspects of the Distribution of Different Autotrophic CO2 Fixation Pathways
Ivan A. Berg
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
The phage-host arms race: Shaping the evolution of microbes
Adi Stern et al.
BIOESSAYS (2011)
Bacterial genome chimaerism and the origin of mitochondria
Ankur Abhishek et al.
CANADIAN JOURNAL OF MICROBIOLOGY (2011)
Detecting Phylogenetic Breakpoints and Discordance from Genome-Wide Alignments for Species Tree Reconstruction
Cecile Ane
GENOME BIOLOGY AND EVOLUTION (2011)
Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes
Ovidiu Popa et al.
GENOME RESEARCH (2011)
Remarkable Abundance and Evolution of Mobile Group II Introns in Wolbachia Bacterial Endosymbionts
Sebastien Leclercq et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Networks of Gene Sharing among 329 Proteobacterial Genomes Reveal Differences in Lateral Gene Transfer Frequency at Different Phylogenetic Depths
Thorsten Kloesges et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
The evolutionary consequences of oxygenic photosynthesis: a body size perspective
Jonathan L. Payne et al.
PHOTOSYNTHESIS RESEARCH (2011)
Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea
Anne-Kristin Kaster et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Reconciling an archaeal origin of eukaryotes with engulfment: a biologically plausible update of the Eocyte hypothesis
Anthony M. Poole et al.
RESEARCH IN MICROBIOLOGY (2011)
A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong
Patrick Forterre
RESEARCH IN MICROBIOLOGY (2011)
Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes
Todd J. Treangen et al.
PLOS GENETICS (2011)
How did LUCA make a living? Chemiosmosis in the origin of life
Nick Lane et al.
BIOESSAYS (2010)
Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution
Thomas Cavalier-Smith
BIOLOGY DIRECT (2010)
The first metazoa living in permanently anoxic conditions
Roberto Danovaro et al.
BMC BIOLOGY (2010)
Physiologically relevant small phosphodonors link metabolism to signal transduction
Alan J. Wolfe
CURRENT OPINION IN MICROBIOLOGY (2010)
Nuclear expression of a group II intron is consistent with spliceosomal intron ancestry
Venkata R. Chalamcharla et al.
GENES & DEVELOPMENT (2010)
Genome Networks Root the Tree of Life between Prokaryotic Domains
Tal Dagan et al.
GENOME BIOLOGY AND EVOLUTION (2010)
The Tree and Net Components of Prokaryote Evolution
Pere Puigbo et al.
GENOME BIOLOGY AND EVOLUTION (2010)
Serpentinization as a source of energy at the origin of life
M. J. Russell et al.
GEOBIOLOGY (2010)
Rooting the Ribosomal Tree of Life
Gregory P. Fournier et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
The energetics of genome complexity
Nick Lane et al.
NATURE (2010)
Comparison of 61 Sequenced Escherichia coli Genomes
Oksana Lukjancenko et al.
MICROBIAL ECOLOGY (2010)
Network analyses structure genetic diversity in independent genetic worlds
Sebastien Halary et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys
William J. Brazelton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function
James A. Cotton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Bacteria with a eukaryotic touch: A glimpse of ancient evolution?
Patrick Forterre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Ancient origin of the integrin-mediated adhesion and signaling machinery
Arnau Sebe-Pedros et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Clostridium ljungdahlii represents a microbial production platform based on syngas
Michael Koepke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Bacterial Na+-translocating ferredoxin: NAD+ oxidoreductase
Eva Biegel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Intermediary Metabolism in Protists: a Sequence-based View of Facultative Anaerobic Metabolism in Evolutionarily Diverse Eukaryotes
Michael L. Ginger et al.
PROTIST (2010)
High Frequency of Horizontal Gene Transfer in the Oceans
Lauren D. McDaniel et al.
SCIENCE (2010)
Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes
Einat Hazkani-Covo et al.
PLOS GENETICS (2010)
The origin and early evolution of eukaryotes in the light of phylogenomics
Eugene V. Koonin
GENOME BIOLOGY (2010)
Bacterial/Fungal Interactions: From Pathogens to Mutualistic Endosymbionts
Donald Y. Kobayashi et al.
Annual Review of Phytopathology (2009)
The origins of phagocytosis and eukaryogenesis
Natalya Yutin et al.
BIOLOGY DIRECT (2009)
Prokaryotic evolution and the tree of life are two different things
Eric Bapteste et al.
BIOLOGY DIRECT (2009)
The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum
Eugene V. Koonin et al.
BIOLOGY DIRECT (2009)
mtDNA mutation pattern in tumors and human evolution are shaped by similar selective constraints
Ilia Zhidkov et al.
GENOME RESEARCH (2009)
On the Free Energy That Drove Primordial Anabolism
Michael Kaufmann
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2009)
The Modern Concept of the Procaryote
William B. Whitman
JOURNAL OF BACTERIOLOGY (2009)
Nickel-based Enzyme Systems
Stephen W. Ragsdale
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Hydrogenosomes and Mitosomes: Conservation and Evolution of Functions
Mark Van Der Giezen
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2009)
The Origin of Life: Chemical Evolution of a Metabolic System in a Mineral Honeycomb?
Sergio Branciamore et al.
JOURNAL OF MOLECULAR EVOLUTION (2009)
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
Olga Zhaxybayeva et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth's middle age
D. T. Johnston et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic supergroups
Vladimir Hampl et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Was nitric oxide the first deep electron sink?
Anne-Lise Ducluzeau et al.
TRENDS IN BIOCHEMICAL SCIENCES (2009)
Evolutionary primacy of sodium bioenergetics
Armen Y. Mulkidjanian et al.
BIOLOGY DIRECT (2008)
Reticulate representation of evolutionary and functional relationships between phage genomes
Gipsi Lima-Mendez et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
Tal Dagan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Extreme polyploidy in a large bacterium
Jennifer E. Mendell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
The archaebacterial origin of eukaryotes
Cymon J. Cox et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Abiogenic hydrocarbon production at Lost City hydrothermal field
Giora Proskurowski et al.
SCIENCE (2008)
The Avalon explosion: Evolution of Ediacara morphospace
Bing Shen et al.
SCIENCE (2008)
The prokaryotic tree of life: past, present ... and future?
James O. McInerney et al.
TRENDS IN ECOLOGY & EVOLUTION (2008)
Coupled ferredoxin and crotonyl coenzyme a (CoA) reduction with NADH catalyzed by the butyryl-CoA dehydrogenase/Etf complex from Clostridium kluyveri
Fuli Li et al.
JOURNAL OF BACTERIOLOGY (2008)
Energy conservation via electron-transferring flavoprotein in anaerobic bacteria
Gloria Herrmann et al.
JOURNAL OF BACTERIOLOGY (2008)
Anaerobic acclimation in Chlamydomonas reinhardtii -: Anoxic gene expression, hydrogenase induction, and metabolic pathways
Florence Mus et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Non-random coextinctions in phylogenetically structured mutualistic networks
Enrico L. Rezende et al.
NATURE (2007)
The Biological Big Bang model for the major transitions in evolution
Eugene V. Koonin
BIOLOGY DIRECT (2007)
Supertrees disentangle the chimerical origin of eukaryotic Genomes
Davide Pisani et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
Symbiosis as an adaptive process and source of phenotypic complexity
Nancy A. Moran
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Essay - The origin of eukaryotes: a reappraisal
Christian de Duve
NATURE REVIEWS GENETICS (2007)
Pattern pluralism and the Tree of Life hypothesis
W. Ford Doolittle et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Importance of widespread gene transfer agent genes in α-proteobacteria
Andrew S. Lang et al.
TRENDS IN MICROBIOLOGY (2007)
The stepwise evolution of early life driven by energy conservation
James G. Ferry et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Eukaryotic evolution, changes and challenges
TM Embley et al.
NATURE (2006)
Origin and evolution of the peroxisomal proteome
Toni Gabaldon et al.
BIOLOGY DIRECT (2006)
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
DR Scannell et al.
NATURE (2006)
Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli et al.
SCIENCE (2006)
Introns and the origin of nucleus-cytosol compartmentalization
W Martin et al.
NATURE (2006)
Inferring phylogeny despite incomplete lineage sorting
WP Maddison et al.
SYSTEMATIC BIOLOGY (2006)
Evolution of intraflagellar transport from coated vesicles and autogenous origin of the eukaryotic cilium
G Jékely et al.
BIOESSAYS (2006)
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
C Pál et al.
NATURE GENETICS (2005)
Archaebacteria (Archaea) and the origin of the eukaryotic nucleus
W Martin
CURRENT OPINION IN MICROBIOLOGY (2005)
The net of life: Reconstructing the microbial phylogenetic network
V Kunin et al.
GENOME RESEARCH (2005)
A mechanism for the association of amino acids with their codons and the origin of the genetic code
SD Copley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A serpentinite-hosted ecosystem:: The lost city hydrothermal field
DS Kelley et al.
SCIENCE (2005)
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
CM Thomas et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
KS Makarova et al.
NUCLEIC ACIDS RESEARCH (2005)
The transition to a sulphidic ocean ∼1.84 billion years ago
SW Poulton et al.
NATURE (2004)
H2-rich fluids from serpentinization:: Geochemical and biotic implications
NH Sleep et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I
I Hrdy et al.
NATURE (2004)
Biased biological functions of horizontally transferred genes in prokaryotic genomes
Y Nakamura et al.
NATURE GENETICS (2004)
The origin of eukaryotes is suggested as the symbiosis of pyrococcus into γ-proteobacteria by phylogenetic tree based on gene content
T Horiike et al.
JOURNAL OF MOLECULAR EVOLUTION (2004)
The nucleolar proteome and the (endosymbiotic) origin of the nucleus
D Moreira et al.
BIOESSAYS (2004)
Mitochondrial remnant organelles of Giardia function in iron-sulphur protein maturation
J Tovar et al.
NATURE (2003)
Single eubacterial origin of eukaryotic Sulfide:Quinone oxidoreductase, a mitochondrial enzyme conserved from the early evolution of eukaryotes during anoxic and sulfidic times
U Theissen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
30,000 years of hydrothermal activity at the Lost City vent field
GL Früh-Green et al.
SCIENCE (2003)
Mitochondrial connection to the origin of the eukaryotic cell
VV Emelyanov
EUROPEAN JOURNAL OF BIOCHEMISTRY (2003)
Whole-genome analysis of photosynthetic prokaryotes
J Raymond et al.
SCIENCE (2002)
Mitochondria as we don't know them
AGM Tielens et al.
TRENDS IN BIOCHEMICAL SCIENCES (2002)
A mitochondrial remnant in the microsporidian Trachipleistophora hominis
BAP Williams et al.
NATURE (2002)
An overview of endosymbiotic models for the origins of eukaryotes, their ATP-producing organelles (mitochondria and hydrogenosomes), and their heterotrophic lifestyle
W Martin et al.
BIOLOGICAL CHEMISTRY (2001)
Mealybug β-proteobacterial endosymbionts contain γ-proteobacterial symbionts
CD von Dohlen et al.
NATURE (2001)
An off-axis hydrothermal vent field near the Mid-Atlantic Ridge at 30°N
DS Kelley et al.
NATURE (2001)
Morphological and ecological complexity in early eukaryotic ecosystems
EJ Javaux et al.
NATURE (2001)
Lethality and centrality in protein networks
H Jeong et al.
NATURE (2001)
The origin of intermediary metabolism
HJ Morowitz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
The chimeric eukaryote: Origin of the nucleus from the karyomastigont in amitochondriate protists
L Margulis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)