4.7 Article

The RNA shapes studio

向作者/读者索取更多资源

Motivation: Abstract shape analysis, first proposed in 2004, allows one to extract several relevant structures from the folding space of an RNA sequence, preferable to focusing in a single structure of minimal free energy. We report recent extensions to this approach. Results: We have rebuilt the original RNASHAPES as a repository of components that allows us to integrate several established tools for RNA structure analysis: RNASHAPES, RNAALISHAPES and PKNOTSRG, including its recent extension PKISS. As a spin-off, we obtain heretofore unavailable functionality: e.g. with PKISS, we can now perform abstract shape analysis for structures holding pseudoknots up to the complexity of kissing hairpin motifs. The new tool PALIKISS can predict kissing hairpin motifs from aligned sequences. Along with the integration, the functionality of the tools was also extended in manifold ways.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

暂无数据
暂无数据