4.7 Article Proceedings Paper

Utilizing RNA-Seq data for de novo coexpression network inference

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Behavioral Sciences

Gene networks and haloperidol-induced catalepsy

O. D. Iancu et al.

GENES BRAIN AND BEHAVIOR (2012)

Article Biochemical Research Methods

ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets

Alyssa C. Frazee et al.

BMC BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

M. Shahid Mukhtar et al.

SCIENCE (2011)

Article Biochemical Research Methods

Is My Network Module Preserved and Reproducible?

Peter Langfelder et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Interactional and functional centrality in transcriptional co-expression networks

Edi Prifti et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

Ovidiu D. Iancu et al.

BMC GENOMICS (2010)

Article Neurosciences

An anatomic gene expression atlas of the adult mouse brain

Lydia Ng et al.

NATURE NEUROSCIENCE (2009)

Review Genetics & Heredity

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang et al.

NATURE REVIEWS GENETICS (2009)

Article Biochemical Research Methods

lumi:: a pipeline for processing Illumina microarray

Pan Du et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder et al.

BMC BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang et al.

NATURE (2008)

Article Multidisciplinary Sciences

Variations in DNA elucidate molecular networks that cause disease

Yanqing Chen et al.

NATURE (2008)

Article Neurosciences

Functional organization of the transcriptome in human brain

Michael C. Oldham et al.

NATURE NEUROSCIENCE (2008)

Article Biochemical Research Methods

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R

Peter Langfelder et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Weighted gene coexpression network analysis strategies applied to mouse weight

Tova F. Fuller et al.

MAMMALIAN GENOME (2007)

Article Mathematical & Computational Biology

Understanding network concepts in modules

Jun Dong et al.

BMC SYSTEMS BIOLOGY (2007)

Article Biochemical Research Methods

Using GOstats to test gene lists for GO term association

S. Falcon et al.

BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Genome-wide atlas of gene expression in the adult mouse brain

Ed S. Lein et al.

NATURE (2007)

Article Multidisciplinary Sciences

Conservation and evolution of gene colexpression networks in human and chimpanzee brains

Michael C. Oldham et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemical Research Methods

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

Adrian Alexa et al.

BIOINFORMATICS (2006)

Review Genetics & Heredity

Network biology:: Understanding the cell's functional organization

AL Barabási et al.

NATURE REVIEWS GENETICS (2004)

Article Mathematical & Computational Biology

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

RA Irizarry et al.

BIOSTATISTICS (2003)

Article Multidisciplinary Sciences

Hierarchical organization of modularity in metabolic networks

E Ravasz et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

R Edgar et al.

NUCLEIC ACIDS RESEARCH (2002)