期刊
BIOINFORMATICS
卷 29, 期 1, 页码 143-145出版社
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/bts646
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资金
- The German Research Foundation [WI 1705/12-1]
C-13-based metabolic flux analysis (C-13-MFA) is the state-of-the-art method to quantitatively determine in vivo metabolic reaction rates in microorganisms. 13CFLUX2 contains all tools for composing flexible computational C-13-MFA workflows to design and evaluate carbon labeling experiments. A specially developed XML language, FluxML, highly efficient data structures and simulation algorithms achieve a maximum of performance and effectiveness. Support of multicore CPUs, as well as compute clusters, enables scalable investigations. 13CFLUX2 outperforms existing tools in terms of universality, flexibility and built-in features. Therewith, 13CFLUX2 paves the way for next-generation high-resolution C-13-MFA applications on the large scale.
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