相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。GPU-BLAST: using graphics processors to accelerate protein sequence alignment
Panagiotis D. Vouzis et al.
BIOINFORMATICS (2011)
CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments
Lakshmi Kuttippurathu et al.
BIOINFORMATICS (2011)
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
Jochen Blom et al.
BIOINFORMATICS (2011)
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Yongchao Liu et al.
BMC BIOINFORMATICS (2011)
Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2010)
CUDA-MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units
Yongchao Liu et al.
PATTERN RECOGNITION LETTERS (2010)
PASS: a program to align short sequences
Davide Campagna et al.
BIOINFORMATICS (2009)
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BFAST: An Alignment Tool for Large Scale Genome Resequencing
Nils Homer et al.
PLOS ONE (2009)
SHRiMP: Accurate Mapping of Short Color-space Reads
Stephen M. Rumble et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Compressed indexing and local alignment of DNA
T. W. Lam et al.
BIOINFORMATICS (2008)
SOAP: short oligonucleotide alignment program
Ruiqiang Li et al.
BIOINFORMATICS (2008)
Using quality scores and longer reads improves accuracy of Solexa read mapping
Andrew D. Smith et al.
BMC BIOINFORMATICS (2008)
Mapping short DNA sequencing reads and calling variants using mapping quality scores
Heng Li et al.
GENOME RESEARCH (2008)
NVIDIA Tesla: A unified graphics and computing architecture
Erik Lindholm et al.
IEEE MICRO (2008)
A space and time efficient algorithm for constructing compressed suffix arrays
Wing-Kai Hon et al.
ALGORITHMICA (2007)
Indexing compressed text
P Ferragina et al.
JOURNAL OF THE ACM (2005)
Compressed suffix arrays and suffix trees with applications to text indexing and string matching
R Grossi et al.
SIAM JOURNAL ON COMPUTING (2005)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
分享论文
