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Stephen M. Rumble et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
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Compressed indexing and local alignment of DNA
T. W. Lam et al.
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SOAP: short oligonucleotide alignment program
Ruiqiang Li et al.
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Andrew D. Smith et al.
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Heng Li et al.
GENOME RESEARCH (2008)
NVIDIA Tesla: A unified graphics and computing architecture
Erik Lindholm et al.
IEEE MICRO (2008)
A space and time efficient algorithm for constructing compressed suffix arrays
Wing-Kai Hon et al.
ALGORITHMICA (2007)
Indexing compressed text
P Ferragina et al.
JOURNAL OF THE ACM (2005)
Compressed suffix arrays and suffix trees with applications to text indexing and string matching
R Grossi et al.
SIAM JOURNAL ON COMPUTING (2005)
Versatile and open software for comparing large genomes
S Kurtz et al.
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