相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Characterizing the Existing and Potential Structural Space of Proteins by Large-Scale Multiple Loop Permutations
Liang Dai et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
Low-homology protein threading
Jian Peng et al.
BIOINFORMATICS (2010)
pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination
Anna Lobley et al.
BIOINFORMATICS (2009)
Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network
Eshel Faraggi et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction
Eshel Faraggi et al.
STRUCTURE (2009)
Profile Comparer: a program for scoring and aligning profile hidden Markov models
Martin Madera
BIOINFORMATICS (2008)
Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions
Yuedong Yang et al.
PROTEIN SCIENCE (2008)
MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information
Sitao Wu et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre
Riccardo M. Bennett-Lovsey et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Fold recognition by concurrent use of solvent accessibility and residue depth
Song Liu et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Pcons.net: protein structure prediction meta server
Bjoern Wallner et al.
NUCLEIC ACIDS RESEARCH (2007)
DDOMAIN: Dividing structures into domains using a normalized domain-domain interaction profile
Hongyi Zhou et al.
PROTEIN SCIENCE (2007)
Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training
Ofer Dor et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Automated server predictions in CASP7
James N. D. Battey et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Template-based modeling and free modeling by I-TASSER in CASP7
Yang Zhang
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Analysis of TASSER-based CASP7 protein structure prediction results
Hongyi Zhou et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
fams-ace: A combined method to select the best model after remodeling all server models
Genki Terashi et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
A machine learning information retrieval approach to protein fold recognition
Jianlin Cheng et al.
BIOINFORMATICS (2006)
On the origin and highly likely completeness of single-domain protein structures
Y Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Protein-structure prediction by recombination of fragments
JM Bujnicki
CHEMBIOCHEM (2006)
A graph spectral analysis of the structural similarity network of protein chains
O Krishnadev et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
The HHpred interactive server for protein homology detection and structure prediction
J Söding et al.
NUCLEIC ACIDS RESEARCH (2005)
Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments
HY Zhou et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Assessment of predictions submitted for the CASP6 comparative modeling category
M Tress et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
Alignment of protein sequences by their profiles
MA Marti-Renom et al.
PROTEIN SCIENCE (2004)
Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition
HY Zhou et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
The PDB is a covering set of small protein structures
D Kihara et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
PROSPECT II: protein structure prediction program for genome-scale applications
D Kim et al.
PROTEIN ENGINEERING (2003)
Automated prediction of CASP-5 structures using the Robetta server
D Chivian et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
HY Zhou et al.
PROTEIN SCIENCE (2002)
FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
JY Shi et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy
FS Domingues et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Identification of related proteins on family, superfamily and fold level
E Lindahl et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
MaxSub: an automated measure for the assessment of protein structure prediction quality
N Siew et al.
BIOINFORMATICS (2000)