期刊
BIOINFORMATICS
卷 26, 期 12, 页码 1569-1571出版社
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btq228
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资金
- NSF [0715370]
- Division Of Environmental Biology
- Direct For Biological Sciences [0715370] Funding Source: National Science Foundation
DendroPy is a cross-platform library for the Python programming language that provides for object-oriented reading, writing, simulation and manipulation of phylogenetic data, with an emphasis on phylogenetic tree operations. DendroPy uses a splits-hash mapping to perform rapid calculations of tree distances, similarities and shape under various metrics. It contains rich simulation routines to generate trees under a number of different phylogenetic and coalescent models. DendroPy's data simulation and manipulation facilities, in conjunction with its support of a broad range of phylogenetic data formats (NEXUS, Newick, PHYLIP, FASTA, NeXML, etc.), allow it to serve a useful role in various phyloinformatics and phylogeographic pipelines.
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