期刊
BIOINFORMATICS
卷 26, 期 23, 页码 2983-2985出版社
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btq572
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资金
- National Science Foundation (NSF) [0753335]
- National Institute of General Medical Sciences
- Department of Energy (DOE) [0753335]
- National Library of Medicine
- National Cancer Institute
- National Institute of Neurological Disorders and Stroke
- National Institute of Diabetes and Digestive and Kidney Diseases
- RCSB PDB [NSF DBI 0829586]
- Direct For Biological Sciences
- Div Of Biological Infrastructure [0829586] Funding Source: National Science Foundation
- Direct For Computer & Info Scie & Enginr
- Office of Advanced Cyberinfrastructure (OAC) [0753335] Funding Source: National Science Foundation
With the continuous growth of the RCSB Protein Data Bank ( PDB), providing an up-to-date systematic structure comparison of all protein structures poses an ever growing challenge. Here, we present a comparison tool for calculating both 1D protein sequence and 3D protein structure alignments. This tool supports various applications at the RCSB PDB website. First, a structure alignment web service calculates pairwise alignments. Second, a stand-alone application runs alignments locally and visualizes the results. Third, pre-calculated 3D structure comparisons for the whole PDB are provided and updated on a weekly basis. These three applications allow users to discover novel relationships between proteins available either at the RCSB PDB or provided by the user.
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