4.7 Article

RDP3: a flexible and fast computer program for analyzing recombination

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Virology

Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses

P. Lefeuvre et al.

JOURNAL OF VIROLOGY (2009)

Article Biochemical Research Methods

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1

Sergei L. Kosakovsky Pond et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Microbiology

Avoidance of protein fold disruption in natural virus recombinants

Pierre Lefeuvre et al.

PLOS PATHOGENS (2007)

Article Biochemical Research Methods

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes

Anne-Kathrin Schultz et al.

BMC BIOINFORMATICS (2006)

Article Evolutionary Biology

Phylogenetic identification of lateral genetic transfer events

RG Beiko et al.

BMC EVOLUTIONARY BIOLOGY (2006)

Article Biochemical Research Methods

Dual multiple change-point model leads to more accurate recombination detection

VN Minin et al.

BIOINFORMATICS (2005)

Article Biochemical Research Methods

RDP2: recombination detection and analysis from sequence alignments

DP Martin et al.

BIOINFORMATICS (2005)

Article Multidisciplinary Sciences

The fine-scale structure of recombination rate variation in the human genome

GAT McVean et al.

SCIENCE (2004)

Article Biochemical Research Methods

MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Multiple sequence alignment with the Clustal series of programs

R Chenna et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Multidisciplinary Sciences

Evaluation of methods for detecting recombination from DNA sequences: Computer simulations

D Posada et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Biochemical Research Methods

Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences

MJ Gibbs et al.

BIOINFORMATICS (2000)