4.7 Article

Generalized random set framework for functional enrichment analysis using primary genomics datasets

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Genomics Portals: integrative web-platform for mining genomics data

Kaustubh Shinde et al.

BMC GENOMICS (2010)

Article Biochemistry & Molecular Biology

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures

Miguel Vazquez et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data

Maureen A. Sartor et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Probabilistic retrieval and visualization of biologically relevant microarray experiments

Jose Caldas et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

A general modular framework for gene set enrichment analysis

Marit Ackermann et al.

BMC BIOINFORMATICS (2009)

Article Biochemical Research Methods

CLEAN: CLustering Enrichment ANalysis

Johannes M. Freudenberg et al.

BMC BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery

Chunlai Feng et al.

BMC GENOMICS (2009)

Article Biochemistry & Molecular Biology

ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression

Helen Parkinson et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for high-throughput functional genomic data

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Cell Biology

Influence of fatty acid diets on gene expression in rat mammary epithelial cells

M. Medvedovic et al.

PHYSIOLOGICAL GENOMICS (2009)

Article Toxicology

Similar compounds searching system by using the gene expression microarray database

Hiroyoshi Toyoshiba et al.

TOXICOLOGY LETTERS (2009)

Article Biochemistry & Molecular Biology

Gene expression module-based chemical function similarity search

Yun Li et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biotechnology & Applied Microbiology

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Lourdes Pena-Castillo et al.

GENOME BIOLOGY (2008)

Article Biochemical Research Methods

Exploring the functional landscape of gene expression: directed search of large microarray compendia

Matthew A. Hibbs et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

ProbCD: enrichment analysis accounting for categorization uncertainty

Ricardo Z. N. Vencio et al.

BMC BIOINFORMATICS (2007)

Article Statistics & Probability

RANDOM-SET METHODS IDENTIFY DISTINCT ASPECTS OF THE ENRICHMENT SIGNAL IN GENE-SET ANALYSIS

Michael A. Newton et al.

ANNALS OF APPLIED STATISTICS (2007)

Article Biotechnology & Applied Microbiology

Strategy for encoding and comparison of gene expression signatures

Yajun Yi et al.

GENOME BIOLOGY (2007)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival

LD Miller et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Discovering statistically significant pathways in expression profiling studies

L Tian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays

KH Pan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Genetics & Heredity

Integrative analysis of the cancer transcriptome

DR Rhodes et al.

NATURE GENETICS (2005)

Article Biochemistry & Molecular Biology

Entrez Gene: gene-centered information at NCBI

D Maglott et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

MH Dai et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

Statistical significance for genomewide studies

JD Storey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Summaries of affymetrix GeneChip probe level data

RA Irizarry et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Statistics & Probability

Calibration of p values for testing precise null hypotheses

T Sellke et al.

AMERICAN STATISTICIAN (2001)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)