4.7 Article

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Information theory provides a comprehensive framework for the evaluation of protein structure predictions

Rosemarie Swanson et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

Exploring the structure and function paradigm

Oliver C. Redfern et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Discrimination between distant homologs and structural analogs: Lessons from manually constructed, reliable data sets

Hua Cheng et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Benchmarking template selection and model quality assessment for high-resolution comparative modelling

M. I. Sadowski et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemical Research Methods

Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone

Adam James Reid et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

UniRef: comprehensive and non-redundant UniProt reference clusters

Baris E. Suzek et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

The generation of new protein functions by the combination of domains

Matthew Bashton et al.

STRUCTURE (2007)

Article Biochemistry & Molecular Biology

Template-based modeling and free modeling by I-TASSER in CASP7

Yang Zhang

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Analysis of TASSER-based CASP7 protein structure prediction results

Hongyi Zhou et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Assessment of CASP7 predictions in the high accuracy template-based modeling category

Randy J. Read et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Critical assessment of methods of protein structure prediction - Round VII

John Moult et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Structural diversity of domain superfamilies in the CATH database

Gabrielle A. Reeves et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemical Research Methods

High throughput profile-profile based fold recognition for the entire human proteome

Liam J. McGuffin et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

LiveBench-8: The large-scale, continuous assessment of automated protein structure prediction

L Rychlewski et al.

PROTEIN SCIENCE (2005)

Article Biochemical Research Methods

Protein homology detection by HMM-HMM comparison

J Söding

BIOINFORMATICS (2005)

Review Biochemistry & Molecular Biology

Protein families and their evolution - A structural perspective

CA Orengo et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2005)

Article Biochemistry & Molecular Biology

Scoring function for automated assessment of protein structure template quality

Y Zhang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

The ASTRAL Compendium in 2004

JM Chandonia et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

SWISS-MODEL: an automated protein homology-modeling server

T Schwede et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemical Research Methods

Improvement of the GenTHREADER method for genomic fold recognition

LJ McGuffin et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Finding weak similarities between proteins by sequence profile comparison

AR Panchenko

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

In search for more accurate alignments in the twilight zone

L Jaroszewski et al.

PROTEIN SCIENCE (2002)

Article Biochemistry & Molecular Biology

Quantifying the similarities within fold space

A Harrison et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

A comparison of profile hidden Markov model procedures for remote homology detection

M Madera et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Within the twilight zone: A sensitive profile-profile comparison tool based on information theory

G Yona et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins

H Hegyi et al.

GENOME RESEARCH (2001)

Review Biochemistry & Molecular Biology

Fold change in evolution of protein structures

NV Grishin

JOURNAL OF STRUCTURAL BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Comparison of sequence profiles. Strategies for structural predictions using sequence information

L Rychlewski et al.

PROTEIN SCIENCE (2000)

Article Biochemical Research Methods

MaxSub: an automated measure for the assessment of protein structure prediction quality

N Siew et al.

BIOINFORMATICS (2000)