相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。EVALUATION OF INTER-LABORATORY AND CROSS-PLATFORM CONCORDANCE OF DNA MICROARRAYS THROUGH DISCRIMINATING GENES AND CLASSIFIER TRANSFERABILITY
SHIHONG MAO et al.
Journal of Bioinformatics and Computational Biology (2009)
Apparently low reproducibility of true differential expression discoveries in microarray studies
Min Zhang et al.
BIOINFORMATICS (2008)
Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories
Da Yang et al.
BIOINFORMATICS (2008)
Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data
James J. Chen et al.
BMC BIOINFORMATICS (2007)
A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance
Shunpu Zhang
BMC BIOINFORMATICS (2007)
Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
Daniel R. Rhodes et al.
NEOPLASIA (2007)
GO-2D: identifying 2-dimensional cellular-localized functional modules in Gene Ontology
Jing Zhu et al.
BMC GENOMICS (2007)
Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes
Alicia Oshlack et al.
GENOME BIOLOGY (2007)
Statistical methods and microarray data
Lev Klebanov et al.
NATURE BIOTECHNOLOGY (2007)
Gene expression profiling in the early phases of DMD: a constant molecular signature characterizes DMD muscle from early postnatal life throughout disease progression
Mario Pescatori et al.
FASEB JOURNAL (2007)
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Leming Shi et al.
NATURE BIOTECHNOLOGY (2006)
Evaluation of external RNA controls for the assessment of microarray performance
Weida Tong et al.
NATURE BIOTECHNOLOGY (2006)
Rat toxicogenomic study reveals analytical consistency across microarray platforms
Lei Guo et al.
NATURE BIOTECHNOLOGY (2006)
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
Ian B. Jeffery et al.
BMC BIOINFORMATICS (2006)
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
L Ein-Dor et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Assessing stability of gene selection in microarray data analysis
X Qiu et al.
BMC BIOINFORMATICS (2006)
A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
Y Xie et al.
BIOINFORMATICS (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential
LM Shi et al.
BMC BIOINFORMATICS (2005)
The effects of normalization on the correlation structure of microarray data
X Qiu et al.
BMC BIOINFORMATICS (2005)
Multiple-laboratory comparison of microarray platforms
RA Irizarry et al.
NATURE METHODS (2005)
Redefinition of affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
SL Carter et al.
BMC BIOINFORMATICS (2005)
Prediction of cancer outcome with microarrays: a multiple random validation strategy
S Michiels et al.
LANCET (2005)
Outcome signature genes in breast cancer: is there a unique set?
L Ein-Dor et al.
BIOINFORMATICS (2005)
Opinion - Rules of evidence for cancer molecular-marker discovery and validation
DF Ransohoff
NATURE REVIEWS CANCER (2004)
Gene expression profiling identifies clinically relevant subtypes of prostate cancer
J Lapointe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Microarray reality checks in the context of a complex disease
GLG Miklos et al.
NATURE BIOTECHNOLOGY (2004)
Evaluation of gene expression measurements from commercial microarray platforms
PK Tan et al.
NUCLEIC ACIDS RESEARCH (2003)
A comparison of parametric versus permutation methods with applications to general and temporal microarray gene expression data
RH Xu et al.
BIOINFORMATICS (2003)
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
M Diehn et al.
NUCLEIC ACIDS RESEARCH (2003)
Identifying biological themes within lists of genes with EASE
DA Hosack et al.
GENOME BIOLOGY (2003)
Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle
JN Haslett et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Gene expression correlates of clinical prostate cancer behavior
D Singh et al.
CANCER CELL (2002)
Empirical Bayes analysis of a microarray experiment
B Efron et al.
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2001)
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
A Bhattacharjee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Diversity of gene expression in adenocarcinoma of the lung
ME Garber et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Missing value estimation methods for DNA microarrays
O Troyanskaya et al.
BIOINFORMATICS (2001)
Significance analysis of microarrays applied to the ionizing radiation response
VG Tusher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)