4.7 Article

Predicting small ligand binding sites in proteins using backbone structure

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Characterizing the microenvironment surrounding protein sites

Steven C. Bagley et al.

PROTEIN SCIENCE (2010)

Article Biochemical Research Methods

Prediction of zinc-binding sites in proteins from sequence

Nanjiang Shu et al.

BIOINFORMATICS (2008)

Editorial Material Biochemistry & Molecular Biology

Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI production centers

Stephen K. Burley et al.

STRUCTURE (2008)

Article Biochemistry & Molecular Biology

Automated prediction of ligand-binding sites in proteins

Rodney Harris et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation

Michal Brylinski et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Prediction of transition metal-binding sites from apo protein structures

Mariana Babor et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Robust recognition of zinc binding sites in proteins

Jessica C. Ebert et al.

PROTEIN SCIENCE (2008)

Article Biochemical Research Methods

Automatic generation of 3D motifs for classification of protein binding sites

Jean-Christophe Nebel et al.

BMC BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Identifying cysteines and histidines in transition-metal-binding sites using support vector machines and neural networks

Andrea Passerini et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces

Nicholas J. Burgoyne et al.

BIOINFORMATICS (2006)

Review Biochemistry & Molecular Biology

Comparative modeling for protein structure prediction

K Ginalski

CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

A method for localizing ligand binding pockets in protein structures

F Glaser et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Review Multidisciplinary Sciences

The impact of structural genomics: Expectations and outcomes

JM Chandonia et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

MODBASE: a database of annotated comparative protein structure models and associated resources

Ursula Pieper et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Pfam: clans, web tools and services

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Biochemistry & Molecular Biology

Advances in homology protein structure modeling

Zhexin Xiang

CURRENT PROTEIN & PEPTIDE SCIENCE (2006)

Article Biochemistry & Molecular Biology

Statistical analysis and prediction of protein-protein interfaces

AJ Bordner et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)

Article Multidisciplinary Sciences

Prediction of water and metal binding sites and their affinities by using the Fold-X force field

JWH Schymkowitz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemical Research Methods

Pocketome via comprehensive identification and classification of ligand binding envelopes

JH An et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Article Biochemical Research Methods

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

ATR Laurie et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Crystal structure of a novel shikimate dehydrogenase from Haemophilus influenzae

S Singh et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

A novel statistical ligand-binding site predictor: application to ATP-binding sites

T Guo et al.

PROTEIN ENGINEERING DESIGN & SELECTION (2005)

Article Biochemical Research Methods

The architecture of metal coordination groups in proteins

MM Harding

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Predicting metal-binding site residues in low-resolution structural models

JS Sodhi et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Crystal structure of a putative NADPH-Dependent oxidoreductase (GI:18204011) from mouse at 2.10 Å resolution

I Levin et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Biochemical Research Methods

A hint to search for metalloproteins in gene banks

C Andreini et al.

BIOINFORMATICS (2004)

Letter Biochemistry & Molecular Biology

Announcing the worldwide Protein Data Bank

H Berman et al.

NATURE STRUCTURAL BIOLOGY (2003)

Review Chemistry, Multidisciplinary

Principles governing Mg, Ca, and Zn binding and selectivity in proteins

T Dudev et al.

CHEMICAL REVIEWS (2003)

Review Biochemistry & Molecular Biology

Statistical potentials for fold assessment

F Melo et al.

PROTEIN SCIENCE (2002)

Article Computer Science, Artificial Intelligence

Random forests

L Breiman

MACHINE LEARNING (2001)

Article Biochemistry & Molecular Biology

EF-hand calcium-binding proteins

A Lewit-Bentley et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2000)