期刊
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
卷 123, 期 14, 页码 3311-3322出版社
AMER CHEMICAL SOC
DOI: 10.1021/ja003680e
关键词
-
Fully quantum mechanical calculations exploiting periodic boundary conditions (PBC) have been applied to the study of four different regular structures (alpha- and 3(10)-helix, fully extended and repeated gamma -turns) of the infinite polypeptides of glycine, alanine, and a-aminoisobutyric acid (Aib) in vacuo. a-Helix is predicted to be the most stable conformer for polyalanine and polyglycine, being stabilized over the 3(10)-helix mainly by more favorable dipole-dipole interactions. Contrary to previous suggestions, steric effects and hydrogen-bond strengths are comparable for both helix structures. 3(10)-Helix is preferred for poly-Aib, since in this case ct-helix is strongly distorted due to unfavorable intrachain repulsions. Extended structures and repeated gamma -turns are much less stable than helix structures for all of the polypeptides examined, mainly due to the absence of favorable long-range interactions. The optimized geometries are in good agreement with the available experimental data and reveal a remarkable dependence on the nature of the residue forming the polypeptides; at the same time the electronic and structural parameters of each residue strongly depend on the secondary structure of the polypeptides.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据