相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Whole-Genome Assembly of Klebsiella pneumoniae Coproducing NDM-1 and OXA-232 Carbapenemases Using Single-Molecule, Real-Time Sequencing
Yohei Doi et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
Time to revisit polyphasic taxonomy
Peter Vandamme et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2014)
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
Bas E. Dutilh et al.
BMC GENOMICS (2014)
Complete Genome Sequence of Enterococcus mundtii QU 25, an Efficient L-(1)-Lactic Acid-Producing Bacterium
Yuh Shiwa et al.
DNA RESEARCH (2014)
A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species
Dhamodharan Ramasamy et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Genotype to phenotype: identification of diagnostic vibrio phenotypes using whole genome sequences
Gilda Rose S. Amaral et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea
Jongsik Chun et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov and Nakamurellales ord. nov.
Arnab Sen et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Benchmarking of Methods for Genomic Taxonomy
Mette V. Larsen et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
High-resolution metagenomics
Eran Mick et al.
NATURE BIOTECHNOLOGY (2014)
Explaining microbial genomic diversity in light of evolutionary ecology
Otto X. Cordero et al.
NATURE REVIEWS MICROBIOLOGY (2014)
MetaRef: a pan-genomic database for comparative and community microbial genomics
Katherine Huang et al.
NUCLEIC ACIDS RESEARCH (2014)
IMG 4 version of the integrated microbial genomes comparative analysis system
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2014)
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Ross Overbeek et al.
NUCLEIC ACIDS RESEARCH (2014)
The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4-ST131 Clone
Brian M. Forde et al.
PLOS ONE (2014)
Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
Nadav Kashtan et al.
SCIENCE (2014)
Ordering microbial diversity into ecologically and genetically cohesive units
B. Jesse Shapiro et al.
TRENDS IN MICROBIOLOGY (2014)
Photobacterium sanctipauli sp nov isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil
Ana Paula B. Moreira et al.
PEERJ (2014)
Deposit of microbial strains in public service collections as part of the publication process to underpin good practice in science
Erko Stackebrandt et al.
SPRINGERPLUS (2014)
Microbial genomic taxonomy
Cristiane C. Thompson et al.
BMC GENOMICS (2013)
Explaining microbial phenotypes on a genomic scale: GWAS for microbes
Bas E. Dutilh et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2013)
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke et al.
NATURE (2013)
Genomic Taxonomy of the Genus Prochlorococcus
Cristiane C. Thompson et al.
MICROBIAL ECOLOGY (2013)
Multilocus Sequence Analysis of Nectar Pseudomonads Reveals High Genetic Diversity and Contrasting Recombination Patterns
Sergio Alvarez-Perez et al.
PLOS ONE (2013)
Horizontal gene transfer and the evolution of bacterial and archaeal population structure
Martin F. Polz et al.
TRENDS IN GENETICS (2013)
Comparative Genomics of Wolbachia and the Bacterial Species Concept
Kirsten Maren Ellegaard et al.
PLOS GENETICS (2013)
Prokaryotic systematics in the genomics era
Xiao-Yang Zhi et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2012)
PhenoLink - a web-tool for linking phenotype to ∼omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains
Jumamurat R. Bayjanov et al.
BMC GENOMICS (2012)
Bacterial species may exist, metagenomics reveal
Alejandro Caro-Quintero et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories
Ramon Rossello-Mora
ENVIRONMENTAL MICROBIOLOGY (2012)
Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited
Peter Kaempfer et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Global biogeography of SAR11 marine bacteria
Mark V. Brown et al.
MOLECULAR SYSTEMS BIOLOGY (2012)
Transforming clinical microbiology with bacterial genome sequencing
Xavier Didelot et al.
NATURE REVIEWS GENETICS (2012)
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
Ioanna Pagani et al.
NUCLEIC ACIDS RESEARCH (2012)
Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations
Otto X. Cordero et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Population Genomics of Early Events in the Ecological Differentiation of Bacteria
B. Jesse Shapiro et al.
SCIENCE (2012)
On the fitness of microbial taxonomy
Javier Tamames et al.
TRENDS IN MICROBIOLOGY (2012)
Patterns of Gene Flow Define Species of Thermophilic Archaea
Hinsby Cadillo-Quiroz et al.
PLOS BIOLOGY (2012)
Merging Taxonomy with Ecological Population Prediction in a Case Study of Vibrionaceae
Sarah P. Preheim et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Towards a genome based taxonomy of Mycoplasmas
Cristiane C. Thompson et al.
INFECTION GENETICS AND EVOLUTION (2011)
The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980) - a taxonomic opinion
Fabiano L. Thompson et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)
Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
Jane Wiedenbeck et al.
FEMS MICROBIOLOGY REVIEWS (2011)
Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
Bradd J. Haley et al.
BMC MICROBIOLOGY (2010)
Notes on the characterization of prokaryote strains for taxonomic purposes
B. J. Tindall et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
Vincent J. Denef et al.
ISME JOURNAL (2010)
En route to a genome-based classification of Archaea and Bacteria?
H. -P. Klenk et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2010)
Standard operating procedure for computing pangenome trees
Lars Snipen et al.
STANDARDS IN GENOMIC SCIENCES (2010)
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
Alexander F. Auch et al.
STANDARDS IN GENOMIC SCIENCES (2010)
Genomic taxonomy of vibrios
Cristiane C. Thompson et al.
BMC EVOLUTIONARY BIOLOGY (2009)
On the origin of prokaryotic species
W. Ford Doolittle et al.
GENOME RESEARCH (2009)
The Modern Concept of the Procaryote
William B. Whitman
JOURNAL OF BACTERIOLOGY (2009)
Universal species concept: pipe dream or a step toward unifying biology?
James T. Staley
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2009)
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
Dongying Wu et al.
NATURE (2009)
OPINION Explaining microbial population genomics through phage predation
Francisco Rodriguez-Valera et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Assembling the Marine Metagenome, One Cell at a Time
Tanja Woyke et al.
PLOS ONE (2009)
The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity
Christophe Fraser et al.
SCIENCE (2009)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
Konstantinos T. Konstantinidis et al.
ISME JOURNAL (2008)
Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation
James Mallet
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
Resource partitioning and sympatric differentiation among closely related bacterioplankton
Dana E. Hunt et al.
SCIENCE (2008)
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
Pablo Yarza et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2008)
Recombination and the nature of bacterial speciation
Christophe Fraser et al.
SCIENCE (2007)
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
Martin F. Polz et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
The bacterial species dilemma and the genomic-phylogenetic species concept
James T. Staley
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
Recombination in thermotoga: Implications for species concepts and biogeography
CL Nesbo et al.
GENETICS (2006)
The integrated microbial genomes (IMG) system
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2006)
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis et al.
JOURNAL OF BACTERIOLOGY (2005)
Genome streamlining in a cosmopolitan oceanic bacterium
SJ Giovannoni et al.
SCIENCE (2005)
Ernst Mayr and the modern concept of species
K de Queiroz
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Re-evaluating prokaryotic species
D Gevers et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
PD Karp et al.
NUCLEIC ACIDS RESEARCH (2005)
Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case
T Coenye et al.
MICROBIOLOGY-SGM (2003)
The Phage Proteomic Tree: a genome-based taxonomy for phage
F Rohwer et al.
JOURNAL OF BACTERIOLOGY (2002)
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
E Stackebrandt et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2002)
Universal trees based on large combined protein sequence data sets
JR Brown et al.
NATURE GENETICS (2001)
Intraspecies variation in bacterial genomes: the need for a species genome concept
RT Lan et al.
TRENDS IN MICROBIOLOGY (2000)
分享论文
