期刊
GENES & DEVELOPMENT
卷 17, 期 22, 页码 2839-2851出版社
COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT
DOI: 10.1101/gad.1142203
关键词
RNA polymerase; sigma factor; transcriptional regulation; E. coli; pausing
资金
- NIGMS NIH HHS [T32 GM008349, R37 GM038660, R01 GM038660, GM38660] Funding Source: Medline
Bacterial sigma factors compete for binding to RNA polymerase (RNAP) to control promoter selection, and in some cases interact with RNAP to regulate at least the early stages of transcript elongation. However, the effective concentration of sigmas in vivo, and the extent to which sigma can regulate transcript elongation generally, are unknown. We report that tethering sigma(70) to all RNAP molecules via genetic fusion of rpoD to rpoC (encoding sigma(70) and RNAP's beta' subunit, respectively) yields viable Escherichia coli strains in which alternative sigma-factor function is not impaired. beta':: sigma(70) RNAP transcribed DNA normally in vitro, but allowed 4T-dependent pausing at extended -10-like sequences anywhere in a transcriptional unit. Based on measurement of the effective concentration of tethered sigma(70), we conclude that the effective concentration of sigma(70) in E. coli (i.e., its thermodynamic activity) is close to its bulk concentration. At this level, sigma(70) would be a bona fide elongation factor able to direct transcriptional pausing even after its release from RNAP during promoter escape.
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