Duplex-promoted platination of adenine-N3 in the minor groove of DNA: Challenging a longstanding bioinorganic paradigm

The interactions of [Pt(en)Cl(ACRAMTU-S)](NO3)(2) (PT-ACRAMTU, en = ethane-1,2-diamine, ACRAMTU = 1-[2-(acridin-9-ylamino)ethyl]-1,3-dimethylthiourea) with adenine in DNA have been studied using a combination of analytical and high-resolution structural methods. For the first time, a cytotoxic platinum(II) complex has been demonstrated to form adducts in the minor groove of DNA through platination of the adenine-N3 endocyclic nitrogen. An acidic depurination assay was developed that allowed the controlled and selective (pH 2, 60 degreesC, 12 h) release of platinum-modified adenine from drug-treated nucleic acid samples. From the digested mixtures, three adducts were isolated by semipreparative reverse phase high-performance liquid chromatography and studied by electrospray ionization mass spectrometry (in-line LC-MS), variable-pH H-1 NMR spectroscopy, and, where applicable, X-ray crystallography. The three species were identified as the N7 (A*-I), N3 (A*-II), and N1 (A*-III) linkage isomers of [Pt(en)(ACRAMTU-S)(adenine)](3+) (A*). Incubations carried out with the single- and double-stranded model sequences, d(TA)(5) and d(TA)(15), as well as native DNA indicate that the adduct profiles (A*-I:A*-II:A*-III ratios) are sensitive to the nature of the nucleic acid template. A*-II was found to be a double-strand specific adduct. The crystal structure of this adduct has been determined, providing ultimate evidence for the N3 connectivity of platinum. A*-II crystallizes in the triclinic space group P (1) over bar in the form of centrosymmetric dimers, {[Pt(en)(ACRAMTU-S)(adenine-N3)](2)}(6+). The cations are stabilized by a combination of adenine-adenine base pairing (N6...N1 2.945(5) Angstrom) and mutual acridine-adenine base stacking. Tandem mass spectra and H-1 chemical shift anomalies indicate that this type of self-association is not merely a crystal packing effect but persists in solution. The monofunctional platination of adenine at, its N7, N3, and N1 positions in a significant fraction of adducts breaks a longstanding paradigm in platinum-DNA chemistry, the requirement for nucleophilic attack of guanine-N7 as the principal step in cross-link formation. The biological consequences and potential therapeutic applications of the unique base and groove recognition of PT-ACRAMTU are discussed.