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Louis-Charles Fortier et al.
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Evidence of In Vivo Prophage Induction during Clostridium difficile Infection
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Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Tim Carver et al.
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Ben Langmead et al.
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Janet Y. Nale et al.
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Epidemiology and control of Clostridium difficile infections in healthcare settings: an update
Frederic Barbut et al.
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Marianne Horgan et al.
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Bacteriophage resistance mechanisms
Simon J. Labrie et al.
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High-throughput quantification of splicing isoforms
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Differential expression analysis for sequence count data
Simon Anders et al.
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Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes
Marco Ventura et al.
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The Sequence Alignment/Map format and SAMtools
Heng Li et al.
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Bart Roucourt et al.
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Bacteriophage-Mediated Toxin Gene Regulation in Clostridium difficile
Revathi Govind et al.
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Jenny E. Emerson et al.
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Clostridium difficile infection: new developments in epidemiology and pathogenesis
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Richard A. Stabler et al.
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Molecular characterization of a Clostridium difficile bacteriophage and its cloned biologically active endolysin
Melinda J. Mayer et al.
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Streptococcus pyogenes pSM19035 requires dynamic assembly of ATP-bound ParA and ParB on parS DNA during plasmid segregation
Florencia Pratto et al.
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Morphological and genetic diversity of temperate phages in Clostridium difficile
Louis-Charles Fortier et al.
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The ClosTron:: A universal gene knock-out system for the genus Clostridium
John T. Heap et al.
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Shan Goh et al.
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Mohammed Sebaihia et al.
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The ltp gene of temperate Streptococcus thermophilus phage TP-J34 confers superinfection exclusion to Streptococcus thermophilus and Lactococcus lactis
Xingmin Sun et al.
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M Ventura et al.
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Y Sakaguchi et al.
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Y Chen et al.
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Switches in bacteriophage lambda development
AB Oppenheim et al.
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S Goh et al.
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AC Groth et al.
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H Brüssow et al.
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JFML Seegers et al.
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DJ Banks et al.
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Transcription analysis of Streptococcus thermophilus phages in the lysogenic state
M Ventura et al.
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H Brüssow et al.
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S McGrath et al.
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E Calabi et al.
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RW Hendrix et al.
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C Husson-Kao et al.
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