Statistics of protein library construction

We have investigated the statistics associated with constructing and sampling large protein-encoding libraries. Using fairly simple statistics we have written algorithms for estimating the diversity in libraries generated by the most commonly used protocols, including error-prone PCR, DNA shuffling, StEP PCR, oligonucleotide-directed randomization, MAX randomization, synthetic shuffling, DHR, ADO and SISDC. Availability: Web interface and C++ source code available at http://guinevere.otago.ac.nz/stats.html Contact: aef@sanger.otago.ac.nz Supplementary information: Complete mathematical notes, model assumptions and justification, users' guide and worked examples at above website.