4.3 Article

Polaribacter marinivivus sp nov., a member of the family Flavobacteriaceae isolated from seawater

出版社

SPRINGER
DOI: 10.1007/s10482-014-0283-4

关键词

Seawater; Polyphasic taxonomy; Novel species; Polaribacter marinivivus

资金

  1. project on survey of indigenous species of Korea of the National Institute of Biological Resources (NIBR) under the Ministry of Environment (MOE)
  2. Program for Collection, Management and Utilization of Biological Resources from the Ministry of Science, ICT & Future Planning (MSIP) of the Republic of Korea [NRF-2013M3A9A5075953]

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A Gram-stain negative, non-flagellated, non-gliding, aerobic and rod-shaped bacterium, designated GYSW-15(T), was isolated from a seawater of Geoje island on the South Sea, South Korea, and subjected to a polyphasic taxonomic approach. Strain GYSW-15(T) was found to grow optimally at 30 A degrees C, at pH 7.0-8.0 and in the presence of approximately 2.0 % (w/v) NaCl. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain GYSW-15(T) belongs to the genus Polaribacter, clustering coherently with the type strain of Polaribacter porphyrae showing sequence similarity value of 97.0 %. Strain GYSW-15(T) exhibited 16S rRNA gene sequence similarity values of 94.3-96.4 % to the type strains of the other Polaribacter species. Strain GYSW-15(T) was found to contain MK-6 as the predominant menaquinone and iso-C-15:0, iso-C-15:1 G, iso-C-16:0 3-OH and summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c) as the major fatty acids. The polar lipid profile of strain GYSW-15(T) containing phosphatidylethanolamine and an unidentified lipid as major components was similar to that of the type strain of P. porphyrae. The DNA G + C content of strain GYSW-15(T) was determined to be 31.2 mol% and its mean DNA-DNA relatedness with P. porphyrae LMG 26671(T) was 17 %. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain GYSW-15(T) is separated from recognized Polaribacter species. On the basis of the data presented, strain GYSW-15(T) is considered to represent a novel species of the genus Polaribacter, for which the name Polaribacter marinivivus sp. nov. is proposed. The type strain is GYSW-15(T) ( = KCTC 42156(T) = CECT 8655(T)).

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