4.8 Article

Resolution exchange simulation

期刊

PHYSICAL REVIEW LETTERS
卷 96, 期 2, 页码 -

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AMER PHYSICAL SOC
DOI: 10.1103/PhysRevLett.96.028105

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  1. NIEHS NIH HHS [ES007318, T32 ES007318] Funding Source: Medline
  2. NIGMS NIH HHS [GM070987, R01 GM070987] Funding Source: Medline

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We extend replica-exchange simulation in two ways and apply our approaches to biomolecules. The first generalization permits exchange simulation between models of differing resolution-i.e., between detailed and coarse-grained models. Such resolution exchange can be applied to molecular systems or spin systems. The second extension is to pseudoexchange simulations, which require little CPU usage for most levels of the exchange ladder and also substantially reduce the need for overlap between levels. Pseudoexchanges can be used in either replica or resolution exchange simulations. We perform efficient, converged simulations of a 50-atom peptide to illustrate the new approaches.

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