4.8 Article

Measurement of long-range 1H-19F scalar coupling constants and their glycosidic torsion dependence in 5-fluoropyrimidine-substituted RNA

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JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
卷 128, 期 17, 页码 5851-5858

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AMER CHEMICAL SOC
DOI: 10.1021/ja060165t

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  1. NCI NIH HHS [F32 CA080349, F32 CA80349] Funding Source: Medline
  2. NIGMS NIH HHS [GM-53320, P01 GM066669, R01 GM053320, GM-66669, P01 GM066669-050005] Funding Source: Medline

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Long-range scalar (5)J(H1',F) couplings were observed in 5-fluoropyrimidine-substituted RNA. We developed a novel (SE)-E-3-F-19-alpha,beta-edited NOESY experiment for quantitation of these long-range scalar (5)J(H1',F) couplings, where the J-couplings can be extracted from inspection of intraresidual (H1',H6) NOE cross-peaks. Quantum chemical calculations were exploited to investigate the relation between scalar couplings and conformations around the glycosidic bond in oligonucleotides. The theoretical dependence of the observed (5)J(H1',F) couplings on the torsion angle chi can be described by a generalized Karplus relationship. The corresponding density functional theory (DFT) analysis is outlined. Additional NMR experiments facilitating the resonance assignments of 5-fluoropyrimidine-substituted RNAs are described, and chemical shift changes due to altered shielding in the presence of fluorine-19 (F-19) are presented.

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