期刊
PROTEOMICS
卷 7, 期 3, 页码 364-366出版社
WILEY-V C H VERLAG GMBH
DOI: 10.1002/pmic.200600682
关键词
bioinformatics; protein identification
MS-based protein identification is an important part of both gel-based and gel-free proteome studies. The MASCOT search engine (http://www.matrixscience.com) provides one of the most popular automated algorithms for this task. Here we present an open-source software library written in Java that parses raw MASCOT results into an easily accessible and fully functional object model (http://genesis.ugent.be/MascotDatfile). Several scripts based on this library are provided as examples, allowing direct automation of important routine tasks involved in processing peptide identifications.
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