4.7 Review

Unpredictability of metabolism-the key role of metabolomics science in combination with next-generation genome sequencing

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Limitations of next-generation genome sequence assembly

Can Alkan et al.

NATURE METHODS (2011)

Article Biochemical Research Methods

Computational mass spectrometry for metabolomics: Identification of metabolites and small molecules

Steffen Neumann et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2010)

Article Biochemical Research Methods

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

Jan Schellenberger et al.

BMC BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

High-throughput generation, optimization and analysis of genome-scale metabolic models

Christopher S. Henry et al.

NATURE BIOTECHNOLOGY (2010)

Review Genetics & Heredity

APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies - the next generation

Michael L. Metzker

NATURE REVIEWS GENETICS (2010)

Article Endocrinology & Metabolism

Decision tree supported substructure prediction of metabolites from GC-MS profiles

Jan Hummel et al.

METABOLOMICS (2010)

Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

Cinzia Cantacessi et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Genetics & Heredity

The Complex Genetic Architecture of the Metabolome

Eva K. F. Chan et al.

PLOS GENETICS (2010)

Review Microbiology

Novel biological insights through metabolomics and C-13-flux analysis

Nicola Zamboni et al.

CURRENT OPINION IN MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Large-Scale Assessment of the Effect of Popularity on the Reliability of Research

Thomas Pfeiffer et al.

PLOS ONE (2009)

Article Biochemical Research Methods

Integration of metabolomic and proteomic phenotypes

Stefanie Wienkoop et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Review Biotechnology & Applied Microbiology

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

Adam M. Feist et al.

NATURE BIOTECHNOLOGY (2008)

Article Biotechnology & Applied Microbiology

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

Markus J. Herrgard et al.

NATURE BIOTECHNOLOGY (2008)

Article Multidisciplinary Sciences

Discovery and revision of Arabidopsis genes by proteogenomics

Natalie E. Castellana et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics

Katja Baerenfaller et al.

SCIENCE (2008)

Article Chemistry, Analytical

Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry

Oliver Fiehn

TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2008)

Letter Biotechnology & Applied Microbiology

The metabolomics standards initiative

Susanna-Assunta Sansone et al.

NATURE BIOTECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

A high-quality catalog of the Drosophila melanogaster proteome

Erich Brunner et al.

NATURE BIOTECHNOLOGY (2007)

Article Mathematical & Computational Biology

An in silico model of the ubiquitin-proteasome system that incorporates normal homeostasis and age-related decline

Carole J. Proctor et al.

BMC SYSTEMS BIOLOGY (2007)

Article Biochemical Research Methods

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

Scott A. Becker et al.

NATURE PROTOCOLS (2007)

Article Biochemical Research Methods

Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry

Ric C. H. De Vos et al.

NATURE PROTOCOLS (2007)

Article Biochemical Research Methods

Flux balance analysis in the era of metabolomics

Jong Min Lee et al.

BRIEFINGS IN BIOINFORMATICS (2006)

Review Plant Sciences

Plant metabolomics: from holistic hope, to hype, to hot topic

RD Hall

NEW PHYTOLOGIST (2006)

Review Pharmacology & Pharmacy

Metabolomics: from pattern recognition to biological interpretation

W Weckwerth et al.

DRUG DISCOVERY TODAY (2005)

Article Biochemistry & Molecular Biology

AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

M Stanke et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Biology

Models of stochastic gene expression

Johan Paulsson

PHYSICS OF LIFE REVIEWS (2005)

Article Biochemical Research Methods

GMD@CSB.DB:: the Golm Metabolome Database

J Kopka et al.

BIOINFORMATICS (2005)

Review Biotechnology & Applied Microbiology

Metabolomics by numbers: acquiring and understanding global metabolite data

R Goodacre et al.

TRENDS IN BIOTECHNOLOGY (2004)

Article Multidisciplinary Sciences

Differential metabolic networks unravel the effects of silent plant phenotypes

W Weckwerth et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Biochemical Research Methods

Advances in flux balance analysis

KJ Kauffman et al.

CURRENT OPINION IN BIOTECHNOLOGY (2003)

Article Biochemical Research Methods

Observing and interpreting correlations in metabolomic networks

R Steuer et al.

BIOINFORMATICS (2003)

Review Plant Sciences

Metabolomics in systems biology

W Weckwerth

ANNUAL REVIEW OF PLANT BIOLOGY (2003)

Review Biotechnology & Applied Microbiology

13C metabolic flux analysis

W Wiechert

METABOLIC ENGINEERING (2001)

Article Multidisciplinary Sciences

The large-scale organization of metabolic networks

H Jeong et al.

NATURE (2000)