相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment
Julia Fukuyama et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
A phylogenetic transform enhances analysis of compositional microbiota data
Justin D. Silverman et al.
ELIFE (2017)
Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets
Alex D. Washburne et al.
PEERJ (2017)
Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data
Gregory B. Gloor et al.
CANADIAN JOURNAL OF MICROBIOLOGY (2016)
Scaling laws predict global microbial diversity
Kenneth J. Locey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
How Should Beta-Diversity Inform Biodiversity Conservation?
Jacob B. Socolar et al.
TRENDS IN ECOLOGY & EVOLUTION (2016)
Prey Carrying Capacity Modulates the Effect of Predation on Prey Diversity
Jacob Socolar et al.
AMERICAN NATURALIST (2015)
Microbiomes in light of traits: A phylogenetic perspective
Jennifer B. H. Martiny et al.
SCIENCE (2015)
Inferring Horizontal Gene Transfer
Matt Ravenhall et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models
Lam Si Tung Ho et al.
SYSTEMATIC BIOLOGY (2014)
Beyond fossil calibrations: realities of molecular clock practices in evolutionary biology
Christy A. Hipsley et al.
FRONTIERS IN GENETICS (2014)
Structure-constrained sparse canonical correlation analysis with an application to microbiome data analysis
Jun Chen et al.
BIOSTATISTICS (2013)
Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis
Samantha J. Riesenfeld et al.
BMC GENOMICS (2013)
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Morgan G. I. Langille et al.
NATURE BIOTECHNOLOGY (2013)
The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
Tomas Vetrovsky et al.
PLOS ONE (2013)
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
Nicola Segata et al.
NATURE COMMUNICATIONS (2013)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
Molecular phylogenetics: principles and practice
Ziheng Yang et al.
NATURE REVIEWS GENETICS (2012)
Independent Contrasts and PGLS Regression Estimators Are Equivalent
Simon P. Blomberg et al.
SYSTEMATIC BIOLOGY (2012)
phytools: an R package for phylogenetic comparative biology (and other things)
Liam J. Revell
METHODS IN ECOLOGY AND EVOLUTION (2012)
Comparative Methods as a Statistical Fix: The Dangers of Ignoring an Evolutionary Model
Rob P. Freckleton et al.
AMERICAN NATURALIST (2011)
ANALYSIS OF A DATA MATRIX AND A GRAPH: METAGENOMIC DATA AND THE PHYLOGENETIC TREE
Elizabeth Purdom
ANNALS OF APPLIED STATISTICS (2011)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
Variation in the mutation rate across mammalian genomes
Alan Hodgkinson et al.
NATURE REVIEWS GENETICS (2011)
Why the Phylogenetic Regression Appears Robust to Tree Misspecification
Eric A. Stone
SYSTEMATIC BIOLOGY (2011)
Picante: R tools for integrating phylogenies and ecology
Steven W. Kembel et al.
BIOINFORMATICS (2010)
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
Micah Hamady et al.
ISME JOURNAL (2010)
Sexual dimorphism in primate aerobic capacity: a phylogenetic test
P. Lindenfors et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2010)
Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives
Jesse R. Zaneveld et al.
NUCLEIC ACIDS RESEARCH (2010)
Calibrating the Tree of Life: fossils, molecules and evolutionary timescales
Felix Forest
ANNALS OF BOTANY (2009)
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
Cuong Than et al.
BMC BIOINFORMATICS (2008)
Microbial contributions to climate change through carbon cycle feedbacks
Richard D. Bardgett et al.
ISME JOURNAL (2008)
Morphometrics of the avian small intestine compared with that of nonflying mammals: A phylogenetic approach
Shana R. Lavin et al.
PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY (2008)
The microbial engines that drive Earth's biogeochemical cycles
Paul G. Falkowski et al.
SCIENCE (2008)
Species divergence and the measurement of microbial diversity
Catherine A. Lozupone et al.
FEMS MICROBIOLOGY REVIEWS (2008)
GEIGER: investigating evolutionary radiations
Luke J. Harmon et al.
BIOINFORMATICS (2008)
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
Catherine A. Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Horizontal gene transfer, genome innovation and evolution
JP Gogarten et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Evolution of the serine β-lactamases:: past, present and future
BG Hall et al.
DRUG RESISTANCE UPDATES (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Testing for phylogenetic signal in comparative data: Behavioral traits are more labile
SP Blomberg et al.
EVOLUTION (2003)
Prokaryotic evolution in light of gene transfer
JP Gogarten et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
RRNA operon copy number reflects ecological strategies of bacteria
JA Klappenbach et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
分享论文
