相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
Dieter M. Tourlousse et al.
NUCLEIC ACIDS RESEARCH (2017)
Collect reliable data on embryo selection
Charis Thompson
NATURE (2017)
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software
Alexander Sczyrba et al.
NATURE METHODS (2017)
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
D. Lee Taylor et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences
Vinita Deshpande et al.
MYCOLOGIA (2016)
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
Daryl M. Gohl et al.
NATURE BIOTECHNOLOGY (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking
Nicholas A. Bokulich et al.
MSYSTEMS (2016)
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
Melanie Schirmer et al.
NUCLEIC ACIDS RESEARCH (2015)
16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets
Nikhil Chaudhary et al.
PLOS ONE (2015)
Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities
Nicholas A. Bokulich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome
Corinne Ferrier Maurice et al.
CELL (2013)
Naive Bayesian Classifiers with Multinomial Models for rRNA Taxonomic Assignment
Kuan-Liang Liu et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2013)
Towards a unified paradigm for sequence-based identification of fungi
Urmas Koljalg et al.
MOLECULAR ECOLOGY (2013)
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
Nicholas A. Bokulich et al.
NATURE METHODS (2013)
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
Evguenia Kopylova et al.
BIOINFORMATICS (2012)
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
Katarina Ihrmark et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald et al.
ISME JOURNAL (2012)
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
David A. W. Soergel et al.
ISME JOURNAL (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
A framework for human microbiome research
Barbara A. Methe et al.
NATURE (2012)
Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms
Yemin Lan et al.
PLOS ONE (2012)
CREST - Classification Resources for Environmental Sequence Tags
Anders Lanzen et al.
PLOS ONE (2012)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
Zongzhi Liu et al.
NUCLEIC ACIDS RESEARCH (2008)
Short pyrosequencing reads suffice for accurate microbial community analysis
Zongzhi Liu et al.
NUCLEIC ACIDS RESEARCH (2007)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
分享论文
