4.6 Article

Detection of stable community structures within gut microbiota co-occurrence networks from different human populations

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Microbiology

Formation of propionate and butyrate by the human colonic microbiota

Petra Louis et al.

ENVIRONMENTAL MICROBIOLOGY (2017)

Article Multidisciplinary Sciences

Quantitative microbiome profiling links gut community variation to microbial load

Doris Vandeputte et al.

NATURE (2017)

Article Ecology

Community structure follows simple assembly rules in microbial microcosms

Jonathan Friedman et al.

NATURE ECOLOGY & EVOLUTION (2017)

Article Ecology

Engineering microbial consortia for controllable outputs

Stephen R. Lindemann et al.

ISME JOURNAL (2016)

Article Multidisciplinary Sciences

Population-level analysis of gut microbiome variation

Gwen Falony et al.

SCIENCE (2016)

Editorial Material Biochemistry & Molecular Biology

Oscillospira : a Central, Enigmatic Component of the Human Gut Micropiota

Tom Konikoff et al.

TRENDS IN MICROBIOLOGY (2016)

Article Genetics & Heredity

Signatures of early frailty in the gut microbiota

Matt Jackson et al.

GENOME MEDICINE (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

Article Biotechnology & Applied Microbiology

Heritable components of the human fecal microbiome are associated with visceral fat

Michelle Beaumont et al.

GENOME BIOLOGY (2016)

Article Biochemical Research Methods

CCLasso: correlation inference for compositional data through Lasso

Huaying Fang et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

Personalized Nutrition by Prediction of Glycemic Responses

David Zeevi et al.

Review Microbiology

Metagenomics meets time series analysis: unraveling microbial community dynamics

Karoline Faust et al.

CURRENT OPINION IN MICROBIOLOGY (2015)

Article Biochemical Research Methods

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

Zachary D. Kurtz et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Human Genetics Shape the Gut Microbiome

Julia K. Goodrich et al.

Article Microbiology

The Treatment-Naive Microbiome in New-Onset Crohn's Disease

Dirk Gevers et al.

CELL HOST & MICROBE (2014)

Article Multidisciplinary Sciences

Diet rapidly and reproducibly alters the human gut microbiome

Lawrence A. David et al.

NATURE (2014)

Article Multidisciplinary Sciences

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

Roie Levy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

Vanessa K. Ridaura et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Significant Scales in Community Structure

V. A. Traag et al.

SCIENTIFIC REPORTS (2013)

Article Biochemical Research Methods

Molecular ecological network analyses

Ye Deng et al.

BMC BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

A metagenome-wide association study of gut microbiota in type 2 diabetes

Junjie Qin et al.

NATURE (2012)

Article Multidisciplinary Sciences

Human gut microbiome viewed across age and geography

Tanya Yatsunenko et al.

NATURE (2012)

Review Microbiology

Microbial interactions: from networks to models

Karoline Faust et al.

NATURE REVIEWS MICROBIOLOGY (2012)

Article Biochemical Research Methods

Microbial Co-occurrence Relationships in the Human Microbiome

Karoline Faust et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

Inferring Correlation Networks from Genomic Survey Data

Jonathan Friedman et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Multidisciplinary Sciences

Enterotypes of the human gut microbiome

Manimozhiyan Arumugam et al.

NATURE (2011)

Article Immunology

Diet, gut microbiota and immune responses

Kendle M. Maslowski et al.

NATURE IMMUNOLOGY (2011)

Article Multidisciplinary Sciences

Correlation Network Analysis Applied to Complex Biofilm Communities

Ana E. Duran-Pinedo et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

Gary D. Wu et al.

SCIENCE (2011)

Article Biochemistry & Molecular Biology

A global network of coexisting microbes from environmental and whole-genome sequence data

Samuel Chaffron et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

Community Structure in Time-Dependent, Multiscale, and Multiplex Networks

Peter J. Mucha et al.

SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

Biopython: freely available Python tools for computational molecular biology and bioinformatics

Peter J. A. Cock et al.

BIOINFORMATICS (2009)

Article Endocrinology & Metabolism

Butyrate Improves Insulin Sensitivity and Increases Energy Expenditure in Mice

Zhanguo Gao et al.

DIABETES (2009)

Article Physics, Fluids & Plasmas

Multiresolution community detection for megascale networks by information-based replica correlations

Peter Ronhovde et al.

PHYSICAL REVIEW E (2009)

Article Biochemical Research Methods

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder et al.

BMC BIOINFORMATICS (2008)

Article Mechanics

Fast unfolding of communities in large networks

Vincent D. Blondel et al.

JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2008)

Article Multidisciplinary Sciences

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

Harry Sokol et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

An obesity-associated gut microbiome with increased capacity for energy harvest

Peter J. Turnbaugh et al.

NATURE (2006)

Article Cell Biology

Scale-free networks in cell biology

R Albert

JOURNAL OF CELL SCIENCE (2005)

Article Biochemistry & Molecular Biology

A general framework for weighted gene co-expression network analysis

Bin Zhang et al.

STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2005)

Article Physics, Fluids & Plasmas

Finding and evaluating community structure in networks

MEJ Newman et al.

PHYSICAL REVIEW E (2004)

Article Biotechnology & Applied Microbiology

Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine

SH Duncan et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Article Biochemistry & Molecular Biology

Scale-free networks in biology: new insights into the fundamentals of evolution?

YI Wolf et al.

BIOESSAYS (2002)

Article Multidisciplinary Sciences

The large-scale organization of metabolic networks

H Jeong et al.

NATURE (2000)