相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium
Stephanie S. Porter et al.
ISME JOURNAL (2017)
Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents
Rika E. Anderson et al.
NATURE COMMUNICATIONS (2017)
Glucose Uptake in Prochlorococcus: Diversity of Kinetics and Effects on the Metabolism
Maria del Carmen Munoz-Marin et al.
FRONTIERS IN MICROBIOLOGY (2017)
DESMAN: a new tool for de novo extraction of strains from metagenomes
Christopher Quince et al.
GENOME BIOLOGY (2017)
Metagenomics as a preliminary screen for antimicrobial bioprospecting
Soha Al-Amoudi et al.
GENE (2016)
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Stephen Nayfach et al.
GENOME RESEARCH (2016)
Global biogeography of Prochlorococcus genome diversity in the surface ocean
Alyssa G. Kent et al.
ISME JOURNAL (2016)
Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific
Alyse A. Larkin et al.
ISME JOURNAL (2016)
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
Matthew L. Bendall et al.
ISME JOURNAL (2016)
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
Matthias Scholz et al.
NATURE METHODS (2016)
Patient-Specific Bacteroides Genome Variants in Pouchitis
Joseph H. Vineis et al.
MBIO (2016)
A catalogue of 136 microbial draft genomes from Red Sea metagenomes
Mohamed F. Haroon et al.
SCIENTIFIC DATA (2016)
Metagenomic discovery of novel enzymes and biosurfactants in a slaughterhouse biofilm microbial community
Stephan Thies et al.
SCIENTIFIC REPORTS (2016)
Structure and function of the global ocean microbiome
Shinichi Sunagawa et al.
SCIENCE (2015)
Tara Oceans studies plankton at PLANETARY SCALE
P. Bork et al.
SCIENCE (2015)
Functional Basis of Microorganism Classification
Chengsheng Zhu et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Anvi'o: an advanced analysis and visualization platformfor 'omics data
A. Murat Eren et al.
PEERJ (2015)
Prochlorococcus: the structure and function of collective diversity
Steven J. Biller et al.
NATURE REVIEWS MICROBIOLOGY (2015)
ITEP: An integrated toolkit for exploration of microbial pan-genomes
Matthew N. Benedict et al.
BMC GENOMICS (2014)
Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
Nadav Kashtan et al.
SCIENCE (2014)
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
Bas E. Dutilh et al.
NATURE COMMUNICATIONS (2014)
PhyloSift: phylogenetic analysis of genomes and metagenomes
Aaron E. Darling et al.
PEERJ (2014)
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
Steven J. Biller et al.
SCIENTIFIC DATA (2014)
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
Itai Sharon et al.
GENOME RESEARCH (2013)
Ecology of marine Bacteroidetes: a comparative genomics approach
Beatriz Fernandez-Gomez et al.
ISME JOURNAL (2013)
A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology
A. Murat Eren et al.
PLOS ONE (2013)
Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean
Maria del Carmen Munoz-Marin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
Pedro Flombaum et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Patterns and architecture of genomic islands in marine bacteria
Beatriz Fernandez-Gomez et al.
BMC GENOMICS (2012)
Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean
Pia H. Moisander et al.
ISME JOURNAL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles
Vinod Kumar et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2011)
ggplot2: Elegant Graphics for Data Analysis
Cedric Ginestet
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY (2011)
Genomic island variability facilitates Prochlorococcus-virus coexistence
Sarit Avrani et al.
NATURE (2011)
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
Andre E. Minoche et al.
GENOME BIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
Rex R. Malmstrom et al.
ISME JOURNAL (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Ecosystem-specific selection pressures revealed through comparative population genomics
Maureen L. Coleman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Characterization of Prochlorococcus clades from iron-depleted oceanic regions
Douglas B. Rusch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Biogeography of the Sulfolobus islandicus pan-genome
Michael L. Reno et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Genomic islands: tools of bacterial horizontal gene transfer and evolution
Mario Juhas et al.
FEMS MICROBIOLOGY REVIEWS (2009)
Glucose Uptake and Its Effect on Gene Expression in Prochlorococcus
Guadalupe Gomez-Baena et al.
PLOS ONE (2008)
eggNOG: automated construction and annotation of orthologous groups of genes
Lars Juhl Jensen et al.
NUCLEIC ACIDS RESEARCH (2008)
Patterns and implications of gene gain and loss in the evolution of Prochlorococcus
Gregory C. Kettler et al.
PLOS GENETICS (2007)
Natural variation in SARII marine bacterioplankton genomes inferred from metagenomic data
Larry J. Wilhelm et al.
BIOLOGY DIRECT (2007)
Comparative genomics of the lactic acid bacteria
K. Makarova et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Genomic islands and the ecology and evolution of Prochlorococcus
ML Coleman et al.
SCIENCE (2006)
Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
ZI Johnson et al.
SCIENCE (2006)
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome
H Tettelin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Metagenomics and industrial applications
P Lorenz et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Comparative metagenomics of microbial communities
SG Tringe et al.
SCIENCE (2005)
The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise
BE Dutilh et al.
JOURNAL OF MOLECULAR EVOLUTION (2004)
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
NATURE (2004)
The Pfam protein families database
A Bateman et al.
NUCLEIC ACIDS RESEARCH (2004)
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
G Rocap et al.
NATURE (2003)
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
TD Read et al.
NATURE (2003)
Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
G Rocap et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
InterProScan - an integration platform for the signature-recognition methods in InterPro
EM Zdobnov et al.
BIOINFORMATICS (2001)
Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides
NJ West et al.
MICROBIOLOGY-SGM (2001)
Ecological fitness, genomic islands and bacterial pathogenicity - A Darwinian view of the evolution of microbes
J Hacker et al.
EMBO REPORTS (2001)
The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences
J Parkhill et al.
NATURE (2000)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
