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The Sequenced Angiosperm Genomes and Genome Databases

期刊

FRONTIERS IN PLANT SCIENCE
卷 9, 期 -, 页码 -

出版社

FRONTIERS MEDIA SA
DOI: 10.3389/fpls.2018.00418

关键词

angiosperm genomes; genome database; data sharing; big data; comparative genomics

资金

  1. National Key Research and Development Program of China [2016YFD0100305]
  2. National Natural Science Foundation of China [81502437]
  3. Fujian Agriculture and Forestry University
  4. State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops [SKB2017004]

向作者/读者索取更多资源

Angiosperms, the flowering plants, provide the essential resources for human life, such as food, energy, oxygen, and materials. They also promoted the evolution of human, animals, and the planet earth. Despite the numerous advances in genome reports or sequencing technologies, no review covers all the released angiosperm genomes and the genome databases for data sharing. Based on the rapid advances and innovations in the database reconstruction in the last few years, here we provide a comprehensive review for three major types of angiosperm genome databases, including databases for a single species, for a specific angiosperm clade, and for multiple angiosperm species. The scope, tools, and data of each type of databases and their features are concisely discussed. The genome databases for a single species or a clade of species are especially popular for specific group of researchers, while a timely-updated comprehensive database is more powerful for address of major scientific mysteries at the genome scale. Considering the low coverage of flowering plants in any available database, we propose construction of a comprehensive database to facilitate large-scale comparative studies of angiosperm genomes and to promote the collaborative studies of important questions in plant biology.

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