4.8 Article

Dissection of affinity captured LINE-1 macromolecular complexes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

While the revolution will not be crystallized, biochemistry reigns supreme

Yoshimasa Takizawa et al.

PROTEIN SCIENCE (2017)

Article Biochemistry & Molecular Biology

RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases

Laszlo Halasz et al.

GENOME RESEARCH (2017)

Article Biochemistry & Molecular Biology

ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure

Saumya Jain et al.

Article Multidisciplinary Sciences

Protein Complex Affinity Capture from Cryomilled Mammalian Cells

John LaCava et al.

Jove-Journal of Visualized Experiments (2016)

Article Microbiology

HIV-host interactome revealed directly from infected cells

Yang Luo et al.

NATURE MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Primate-Specific ORF0 Contributes to Retrotransposon-Mediated Diversity

Ahmet M. m Denli et al.

Article Biochemistry & Molecular Biology

A 3′ Poly(A) Tract Is Required for LINE-1 Retrotransposition

Aurelien J. Doucet et al.

MOLECULAR CELL (2015)

Article Biochemical Research Methods

Rapid, optimized interactomic screening

Zhanna Hakhverdyan et al.

NATURE METHODS (2015)

Article Biochemistry & Molecular Biology

Stress granules are dispensable for mRNA stabilization during cellular stress

Nadine Bley et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Virology

Proteome analysis of the HIV-1 Gag interactome

Christine E. Engeland et al.

VIROLOGY (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Proteome identification of proteins interacting with histone methyltransferase SET8

Yi Qin et al.

ACTA BIOCHIMICA ET BIOPHYSICA SINICA (2013)

Review Biochemistry & Molecular Biology

Nonsense-mediated mRNA decay - Mechanisms of substrate mRNA recognition and degradation in mammalian cells

Christoph Schweingruber et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2013)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

The Elg1 Replication Factor C-like Complex Functions in PCNA Unloading during DNA Replication

Takashi Kubota et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

The functional interactome landscape of the human histone deacetylase family

Preeti Joshi et al.

MOLECULAR SYSTEMS BIOLOGY (2013)

Article Biochemical Research Methods

Large-scale gene function analysis with the PANTHER classification system

Huaiyu Mi et al.

NATURE PROTOCOLS (2013)

Article Biochemistry & Molecular Biology

hnRNPL and nucleolin bind LINE-1 RNA and function as host factors to modulate retrotransposition

Suresh Peddigari et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition

John L. Goodier et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

A Census of Human Soluble Protein Complexes

Pierre C. Havugimana et al.

Article Biochemistry & Molecular Biology

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

Alfredo Castello et al.

Article Biochemistry & Molecular Biology

Poly(A) Binding Protein C1 Is Essential for Efficient L1 Retrotransposition and Affects L1 RNP Formation

Lixin Dai et al.

MOLECULAR AND CELLULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

Alexander G. Baltz et al.

MOLECULAR CELL (2012)

Article Multidisciplinary Sciences

Landscape of Somatic Retrotransposition in Human Cancers

Eunjung Lee et al.

SCIENCE (2012)

Article Genetics & Heredity

MOV10 RNA Helicase Is a Potent Inhibitor of Retrotransposition in Cells

John L. Goodier et al.

PLOS GENETICS (2012)

Article Biochemistry & Molecular Biology

Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition

Elena Khazina et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Genetics & Heredity

Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs

Wenfeng An et al.

MOBILE DNA (2011)

Article Biochemistry & Molecular Biology

Discrete subcellular partitioning of human retrotransposon RNAs despite a common mechanism of genome insertion

John L. Goodier et al.

HUMAN MOLECULAR GENETICS (2010)

Review Biochemical Research Methods

Profiling of Protein Interaction Networks of Protein Complexes Using Affinity Purification and Quantitative Mass Spectrometry

Robyn M. Kaake et al.

MOLECULAR & CELLULAR PROTEOMICS (2010)

Article Genetics & Heredity

Characterization of LINE-1 Ribonucleoprotein Particles

Aurelien J. Doucet et al.

PLOS GENETICS (2010)

Article Biochemistry & Molecular Biology

PARP is activated at stalled forks to mediate Mre11-dependent replication restart and recombination

Helen E. Bryant et al.

EMBO JOURNAL (2009)

Article Multidisciplinary Sciences

A genome-wide genetic screen for host factors required for hepatitis C virus propagation

Qisheng Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Mapping the local protein interactome of the NuA3 histone acetyltransferase

Sherri K. Smart et al.

PROTEIN SCIENCE (2009)

Article Biochemistry & Molecular Biology

Control of c-myc mRNA stability by IGF2BP1-associated cytoplasmic RNPs

Doreen Weidensdorfer et al.

Article Biochemistry & Molecular Biology

IGF2BP1 enhances HCV IRES-mediated translation initiation via the 3′UTR

Susan Weinlich et al.

Review Genetics & Heredity

The Take and Give Between Retrotransposable Elements and their Hosts

Arthur Beauregard et al.

ANNUAL REVIEW OF GENETICS (2008)

Article Genetics & Heredity

LINE-1 ORF1 protein enhances Alu SINE retrotransposition

Nicholas Wallace et al.

Article Biochemical Research Methods

Identifying dynamic interactors of protein complexes by quantitative mass spectrometry

Xiaorong Wang et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Article Biochemical Research Methods

Molecular composition of IMP1 ribonucleoprotein granules

Lars Jonson et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemistry & Molecular Biology

Cell divisions are required for L1 retrotransposition

Xi Shi et al.

MOLECULAR AND CELLULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Promoter crosstalk effects on gene expression

Mathias Hampf et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles

Deanna A. Kulpa et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

The human RNA surveillance factor UPF1 is required for S phase progression and genome stability

CM Azzalin et al.

CURRENT BIOLOGY (2006)

Article Cell Biology

Unconventional translation of mammalian LINE-1 retrotransposons

RS Alisch et al.

GENES & DEVELOPMENT (2006)

Article Biochemistry & Molecular Biology

LINE-1 RNA splicing and influences on mammalian gene expression

VP Belancio et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition

DA Kulpa et al.

HUMAN MOLECULAR GENETICS (2005)

Article Biochemical Research Methods

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

AJ Tackett et al.

JOURNAL OF PROTEOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Phosphorylation and binding partner analysis of the TSC1-TSC2 complex

M Nellist et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)

Article Multidisciplinary Sciences

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition

AR Muotri et al.

NATURE (2005)

Article Biochemical Research Methods

Blue silver: A very sensitive colloidal Coomassie G-250 staining for proteome analysis

G Candiano et al.

ELECTROPHORESIS (2004)

Review Multidisciplinary Sciences

Mobile elements: Drivers of genome evolution

HH Kazazian

SCIENCE (2004)

Article Biochemistry & Molecular Biology

Hsp90 inhibition depletes Chk1 and sensitizes tumor cells to replication stress

SJH Arlander et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Genetics & Heredity

LINE-mediated retrotransposition of marked Alu sequences

M Dewannieux et al.

NATURE GENETICS (2003)

Article Biochemistry & Molecular Biology

Nuclear import of HIV-1 intracellular reverse transcription complexes is mediated by importin 7

A Fassati et al.

EMBO JOURNAL (2003)

Article Biochemistry & Molecular Biology

Human L1 element target-primed reverse transcription in vitro

GJ Cost et al.

EMBO JOURNAL (2002)

Review Multidisciplinary Sciences

Initial sequencing and analysis of the human genome

ES Lander et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

Human L1 retrotransposition:: cis preference versus trans complementation

W Wei et al.

MOLECULAR AND CELLULAR BIOLOGY (2001)

Review Biochemical Research Methods

The ribonuclease T1 family

H Yoshida

RIBONUCLEASES, PT A (2001)

Article Biochemistry & Molecular Biology

Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon

SL Martin et al.

MOLECULAR AND CELLULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Determination of L1 retrotransposition kinetics in cultured cells

EM Ostertag et al.

NUCLEIC ACIDS RESEARCH (2000)