相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。InterPro in 2017-beyond protein family and domain annotations
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2017)
A genetic switch controls the production of flagella and toxins in Clostridium difficile
Brandon R. Anjuwon-Foster et al.
PLOS GENETICS (2017)
Vpma phase variation is important for survival and persistence of Mycoplasma agalactiae in the immunocompetent host
Rohini Chopra-Dewasthaly et al.
PLOS PATHOGENS (2017)
Variant profiling of evolving prokaryotic populations
Markus Zojer et al.
PEERJ (2017)
Phase-variable methylation and epigenetic regulation by type I restriction-modification systems
Megan De Ste Croix et al.
FEMS MICROBIOLOGY REVIEWS (2017)
Fimbrial phase variation: stochastic or cooperative?
Surabhi Khandige et al.
CURRENT GENETICS (2016)
Global Changes in Mycoplasma gallisepticum Phase-Variable Lipoprotein Gene vlhA Expression during In Vivo Infection of the Natural Chicken Host
K. Pflaum et al.
INFECTION AND IMMUNITY (2016)
Heat shock increases conjugation efficiency in Clostridium difficile
Joseph A. Kirk et al.
ANAEROBE (2016)
Mycoplasma agalactiae Secretion of β-(1→6)-Glucan, a Rare Polysaccharide in Prokaryotes, Is Governed by High-Frequency Phase Variation
P. Gaurivaud et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Site-specific recombinases: molecular machines for the Genetic Revolution
Femi J. Olorunniji et al.
BIOCHEMICAL JOURNAL (2016)
A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures
Bliss Lambert et al.
BMC GENOMICS (2016)
Phase variation of a Type IIG restriction-modification enzyme alters site-specific methylation patterns and gene expression in Campylobacter jejuni strain NCTC11168
Awais Anjum et al.
NUCLEIC ACIDS RESEARCH (2016)
Comprehensive mutagenesis of the fimS promoter regulatory switch reveals novel regulation of type 1 pili in uropathogenic Escherichia coli
Huibin Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae
Jing Li et al.
PLOS PATHOGENS (2016)
Insights from 20 years of bacterial genome sequencing
Miriam Land et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2015)
Phase-Variable Control of Multiple Phenotypes in Acinetobacter baumannii Strain AB5075
Kyle A. Tipton et al.
JOURNAL OF BACTERIOLOGY (2015)
A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae
John M. Atack et al.
NATURE COMMUNICATIONS (2015)
Identification of a Novel Lipoprotein Regulator of Clostridium difficile Spore Germination
Kelly A. Fimlaid et al.
PLOS PATHOGENS (2015)
Global Transcriptional Response of Clostridium difficile Carrying the φCD38-2 Prophage
Ognjen Sekulovic et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Insights into structural variations and genome rearrangements in prokaryotic genomes
Vinita Periwal et al.
BIOINFORMATICS (2015)
Detection of genomic structural variants from next-generation sequencing data
Lorenzo Tattini et al.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2015)
Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq
Jeffrey E. Barrick et al.
BMC GENOMICS (2014)
A survey of tools for variant analysis of next-generation genome sequencing data
Stephan Pabinger et al.
BRIEFINGS IN BIOINFORMATICS (2014)
Phase Variation in Myxococcus xanthus Yields Cells Specialized for Iron Sequestration
Katarzyna Dziewanowska et al.
PLOS ONE (2014)
A random six-phase switch regulates pneumococcal virulence via global epigenetic changes
Ana Sousa Manso et al.
NATURE COMMUNICATIONS (2014)
Systematic identification and quantification of phase variation in commensal and pathogenic Escherichia coli
Amir Goldberg et al.
GENOME MEDICINE (2014)
Phase Variation of PorA, a Major Outer Membrane Protein, Mediates Escape of Bactericidal Antibodies by Neisseria meningitidis
Isfahan Tauseef et al.
INFECTION AND IMMUNITY (2013)
The agr Locus Regulates Virulence and Colonization Genes in Clostridium difficile 027
Melissa J. Martin et al.
JOURNAL OF BACTERIOLOGY (2013)
OmpR regulation of the uropathogenic Escherichia coli fimB gene in an acidic/high osmolality environment
Ann E. Rentschler et al.
MICROBIOLOGY-SGM (2013)
The Spore Differentiation Pathway in the Enteric Pathogen Clostridium difficile
Fatima C. Pereira et al.
PLOS GENETICS (2013)
Precise Manipulation of the Clostridium difficile Chromosome Reveals a Lack of Association between the tcdC Genotype and Toxin Production
Stephen T. Cartman et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
ART: a next-generation sequencing read simulator
Weichun Huang et al.
BIOINFORMATICS (2012)
A Single Promoter Inversion Switches Photorhabdus Between Pathogenic and Mutualistic States
Vishal S. Somvanshi et al.
SCIENCE (2012)
APPLICATIONS OF NEXT-GENERATION SEQUENCING Genome structural variation discovery and genotyping
Can Alkan et al.
NATURE REVIEWS GENETICS (2011)
c-di-GMP Turn-Over in Clostridium difficile Is Controlled by a Plethora of Diguanylate Cyclases and Phosphodiesterases
Eric Bordeleau et al.
PLOS GENETICS (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies - the next generation
Michael L. Metzker
NATURE REVIEWS GENETICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Alternate phase variation in expression of two major surface membrane proteins (MBA and UU376) of Ureaplasma parvum serovar 3
Carl-Ulrich R. Zimmerman et al.
FEMS MICROBIOLOGY LETTERS (2009)
A novel genetic switch controls phase variable expression of CwpV, a Clostridium difficile cell wall protein
Jenny E. Emerson et al.
MOLECULAR MICROBIOLOGY (2009)
Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens
Kirk W. Deitsch et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Characterization of Klebsiella pneumoniae type 1 fimbriae by detection of phase variation during colonization and infection and impact on virulence
Carsten Struve et al.
INFECTION AND IMMUNITY (2008)
Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway
Sinem Beyhan et al.
MOLECULAR MICROBIOLOGY (2007)
A phase-variable mechanism controlling the Campylobacter jejuni FlgR response regulator influences commensalism
David R. Hendrixson
MOLECULAR MICROBIOLOGY (2006)
Two DNA invertases contribute to flagellar phase variation in Salmonella enterica serovar typhimurium strain LT2
K Kutsukake et al.
JOURNAL OF BACTERIOLOGY (2006)
Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation
T Kuwahara et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Mpi recombinase globally modulates the surface architecture of a human commensal bacterium
MJ Coyne et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
J Parkhill et al.
NATURE GENETICS (2003)
Multiple inverted DNA repeats of Bacteroides fragilis that control polysaccharide antigenic variation are similar to the hin region inverted repeats of Salmonella typhimurium
S Patrick et al.
MICROBIOLOGY-SGM (2003)
Phase variation of the 987P-like CS18 fimbriae of human enterotoxigenic Escherichia coli is regulated by site-specific recombinases
S Honarvar et al.
MOLECULAR MICROBIOLOGY (2003)
Extensive surface diversity of a commensal microorganism by multiple DNA inversions
CM Krinos et al.
NATURE (2001)
Analysis of expression of flagella by Salmonella enterica serotype Typhimurium by monoclonal antibodies recognising both phase specific and common epitopes
M Sojka et al.
VETERINARY MICROBIOLOGY (2001)
It takes two transposons to tango - transposable-element-mediated chromosomal rearrangements
YHM Gray
TRENDS IN GENETICS (2000)
Novel type I restriction specificities through domain shuffling of HsdS subunits in Lactococcus lactis
D O'Sullivan et al.
MOLECULAR MICROBIOLOGY (2000)
Iron availability regulates DNA recombination in Neisseria gonorrhoeae
CD Serkin et al.
MOLECULAR MICROBIOLOGY (2000)