相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Microbial genome-wide association studies: lessons from human GWAS
Robert A. Power et al.
NATURE REVIEWS GENETICS (2017)
Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
James Hadfield et al.
GENOME RESEARCH (2017)
Survey, Culture, and Genome Analysis of Ocular Chlamydia trachomatis in Tibetan Boarding Primary Schools in Qinghai Province, China
Le Feng et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2017)
Spatial clustering of high load ocular Chlamydia trachomatis infection in trachoma: a cross-sectional population-based study
Anna Last et al.
PATHOGENS AND DISEASE (2017)
Genome-wide profiling of humoral immunity and pathogen genes under selection identifies immune evasion tactics of Chlamydia trachomatis during ocular infection
Harry Pickering et al.
SCIENTIFIC REPORTS (2017)
Inverse relationship between microRNA-155 and-184 expression with increasing conjunctival inflammation during ocular Chlamydia trachomatis infection
Tamsyn Derrick et al.
BMC INFECTIOUS DISEASES (2016)
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
Mylene M. Maury et al.
NATURE GENETICS (2016)
A principal component meta-analysis on multiple anthropometric traits identifies novel loci for body shape
Janina S. Ried et al.
NATURE COMMUNICATIONS (2016)
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages
Patiyan Andersson et al.
NATURE COMMUNICATIONS (2016)
Correction: Low Prevalence of Conjunctival Infection with Chlamydia trachomatis in a Treatment-Naïve Trachoma-Endemic Region of the Solomon Islands
Robert M. R. Butcher et al.
PLoS Neglected Tropical Diseases (2016)
Identifying lineage effects when controlling for population structure improves power in bacterial association studies
Sarah G. Earle et al.
NATURE MICROBIOLOGY (2016)
Whole-Genome Sequencing in Outbreak Analysis
Carol A. Gilchrist et al.
CLINICAL MICROBIOLOGY REVIEWS (2015)
Deep comparative genomics among Chlamydia trachomatis lymphogranuloma venereum isolates highlights genes potentially involved in pathoadaptation
Vitor Borges et al.
INFECTION GENETICS AND EVOLUTION (2015)
Large-scale whole-genome sequencing of the Icelandic population
Daniel F. Gudbjartsson et al.
NATURE GENETICS (2015)
Bioinformatic Analysis of Chlamydia trachomatis Polymorphic Membrane Proteins PmpE, PmpF, PmpG and PmpH as Potential Vaccine Antigens
Alexandra Nunes et al.
PLOS ONE (2015)
Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors
Vitor Borges et al.
PLOS ONE (2015)
Pathogenesis of Progressive Scarring Trachoma in Ethiopia and Tanzania and Its Implications for Disease Control: Two Cohort Studies
Matthew J. Burton et al.
PLOS NEGLECTED TROPICAL DISEASES (2015)
Chlamydia trachomatis virulence factor CT135 is stable in vivo but highly polymorphic in vitro
Christine Bonner et al.
PATHOGENS AND DISEASE (2015)
In Silico Scrutiny of Genes Revealing Phylogenetic Congruence with Clinical Prevalence or Tropism Properties of Chlamydia trachomatis Strains
Rita Ferreira et al.
G3-GENES GENOMES GENETICS (2015)
Maximizing the Power of Principal-Component Analysis of Correlated Phenotypes in Genome-wide Association Studies
Hugues Aschard et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2014)
Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals
Anthony Youzhi Cheng et al.
BIOINFORMATICS (2014)
Whole-genome enrichment and sequencing of Chlamydia trachomatis directly from clinical samples
Mette T. Christiansen et al.
BMC INFECTIOUS DISEASES (2014)
Identification of type III secretion substrates of Chlamydia trachomatis using Yersinia enterocolitica as a heterologous system
Maria da Cunha et al.
BMC MICROBIOLOGY (2014)
Dissecting Vancomycin-Intermediate Resistance in Staphylococcus aureus Using Genome-Wide Association
Md Tauqeer Alam et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Predicting the virulence of MRSA from its genome sequence
Maisem Laabei et al.
GENOME RESEARCH (2014)
Chlamydia trachomatis Polymorphic Membrane Protein D Is a Virulence Factor Involved in Early Host-Cell Interactions
Laszlo Kari et al.
INFECTION AND IMMUNITY (2014)
Plasmid Copy Number and Disease Severity in Naturally Occurring Ocular Chlamydia trachomatis Infection
Anna R. Last et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
STUDY DESIGNS Statistical power and significance testing in large-scale genetic studies
Pak C. Sham et al.
NATURE REVIEWS GENETICS (2014)
LocTree3 prediction of localization
Tatyana Goldberg et al.
NUCLEIC ACIDS RESEARCH (2014)
PolyTB: A genomic variation map for Mycobacterium tuberculosis
Francesc Coll et al.
TUBERCULOSIS (2014)
Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes
Claire Chewapreecha et al.
PLOS GENETICS (2014)
Risk Factors for Active Trachoma and Ocular Chlamydia trachomatis Infection in Treatment-Naive Trachoma-Hyperendemic Communities of the Bijagos Archipelago, Guinea Bissau
Anna R. Last et al.
PLOS NEGLECTED TROPICAL DISEASES (2014)
An adaptive permutation approach for genome-wide association study: evaluation and recommendations for use
Ronglin Che et al.
BIODATA MINING (2014)
Complete Genome Sequence of Chlamydia trachomatis Ocular Serovar C Strain TW-3
Vitor Borges et al.
GENOME ANNOUNCEMENTS (2014)
Analysis of multiple phenotypes in genome-wide genetic mapping studies
Chen Suo et al.
BMC BIOINFORMATICS (2013)
Carbon Storage Regulator A Contributes to the Virulence of Haemophilus ducreyi in Humans by Multiple Mechanisms
Dharanesh Gangaiah et al.
INFECTION AND IMMUNITY (2013)
Chlamydia trachomatis Plasmid-Encoded Pgp4 Is a Transcriptional Regulator of Virulence-Associated Genes
Lihua Song et al.
INFECTION AND IMMUNITY (2013)
Genomic features beyond Chlamydia trachomatis phenotypes: What do we think we know?
Alexandra Nunes et al.
INFECTION GENETICS AND EVOLUTION (2013)
Effect of long-term laboratory propagation on Chlamydia trachomatis genome dynamics
Vitor Borges et al.
INFECTION GENETICS AND EVOLUTION (2013)
Development and Evaluation of a Next-Generation Digital PCR Diagnostic Assay for Ocular Chlamydia trachomatis Infections
Chrissy H. Roberts et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Chlamydia trachomatis GlgA Is Secreted into Host Cell Cytoplasm
Chunxue Lu et al.
PLOS ONE (2013)
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter
Samuel K. Sheppard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Correction: The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations
Caitlin S. Pepperell et al.
PLoS Pathogens (2013)
Transformation of a plasmid-free, genital tract isolate of Chlamydia trachomatis with a plasmid vector carrying a deletion in CDS6 revealed that this gene regulates inclusion phenotype
Yibing Wang et al.
PATHOGENS AND DISEASE (2013)
Directional Evolution of Chlamydia trachomatis towards Niche-Specific Adaptation
Vitor Borges et al.
JOURNAL OF BACTERIOLOGY (2012)
Assessment of Whole-Genome Mapping in a Well-Defined Outbreak of Salmonella enterica Serotype Saintpaul
P. D. Fey et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles
Benjamin P. Fairfax et al.
NATURE GENETICS (2012)
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
Simon R. Harris et al.
NATURE GENETICS (2012)
YidC1 and YidC2 are functionally distinct proteins involved in protein secretion, biofilm formation and cariogenicity of Streptococcus mutans
Sara R. Palmer et al.
MICROBIOLOGY-SGM (2012)
Induction of Protective Immunity against Chlamydia muridarum Intravaginal Infection with a Chlamydial Glycogen Phosphorylase
Zhihong Li et al.
PLOS ONE (2012)
Plasmid-Cured Chlamydia caviae Activates TLR2-Dependent Signaling and Retains Virulence in the Guinea Pig Model of Genital Tract Infection
Lauren C. Frazer et al.
PLOS ONE (2012)
Effect of linkage disequilibrium on the identification of functional variants
Alun Thomas et al.
GENETIC EPIDEMIOLOGY (2011)
Toll-Like Receptor 2 Activation by Chlamydia trachomatis Is Plasmid Dependent, and Plasmid-Responsive Chromosomal Loci Are Coordinately Regulated in Response to Glucose Limitation by C-trachomatis but Not by C-muridarum
Catherine M. O'Connell et al.
INFECTION AND IMMUNITY (2011)
Development of a Transformation System for Chlamydia trachomatis: Restoration of Glycogen Biosynthesis by Acquisition of a Plasmid Shuttle Vector
Yibing Wang et al.
PLOS PATHOGENS (2011)
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
Nancy Y. Yu et al.
BIOINFORMATICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Phylogenetic Analysis of Chlamydia trachomatis Tarp and Correlation with Clinical Phenotype
Erika I. Lutter et al.
INFECTION AND IMMUNITY (2010)
Genome Sequencing of Recent Clinical Chlamydia trachomatis Strains Identifies Loci Associated with Tissue Tropism and Regions of Apparent Recombination
Brendan M. Jeffrey et al.
INFECTION AND IMMUNITY (2010)
Identification of Chlamydia trachomatis Outer Membrane Complex Proteins by Differential Proteomics
Xiaoyun Liu et al.
JOURNAL OF BACTERIOLOGY (2010)
Pathogenesis of Genital Tract Disease Due to Chlamydia trachomatis
Toni Darville et al.
JOURNAL OF INFECTIOUS DISEASES (2010)
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
Manolo Gouy et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Epidemiology and control of trachoma: systematic review
Victor H. Hu et al.
TROPICAL MEDICINE & INTERNATIONAL HEALTH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain
Helena M. B. Seth-Smith et al.
BMC GENOMICS (2009)
Chlamydia trachomatis Polymorphic Membrane Protein D Is an Oligomeric Autotransporter with a Higher-Order Structure
Kena A. Swanson et al.
INFECTION AND IMMUNITY (2009)
ChlaDub1 of Chlamydia trachomatis suppresses NF-κB activation and inhibits IκBα ubiquitination and degradation
Gaelle Le Negrate et al.
CELLULAR MICROBIOLOGY (2008)
The Chlamydia trachomatis plasmid is a transcriptional regulator of chromosomal genes and a virulence factor
John H. Carlson et al.
INFECTION AND IMMUNITY (2008)
Pathogenic diversity among Chlamydia trachomatis ocular strains in nonhuman primates is affected by subtle genomic variations
Laszlo Kari et al.
JOURNAL OF INFECTIOUS DISEASES (2008)
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Alexandros Stamatakis et al.
SYSTEMATIC BIOLOGY (2008)
Chlamydia trachomatis ompA Variants in Trachoma: What Do They Tell Us?
Aura A. Andreasen et al.
PLOS NEGLECTED TROPICAL DISEASES (2008)
Chlamydial type III secretion system is encoded on ten operons preceded by sigma 70-like promoter elements
P. Scott Hefty et al.
JOURNAL OF BACTERIOLOGY (2007)
Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots
Joao P. Gomes et al.
GENOME RESEARCH (2007)
Different growth rates of Chlamydia trachomatis biovars reflect pathotype
Isao Miyairi et al.
JOURNAL OF INFECTIOUS DISEASES (2006)
Conjunctival FOXP3 expression in trachoma:: Do regulatory T cells have a role in human ocular Chlamydia trachomatis infection?
Nkoyo Faal et al.
PLOS MEDICINE (2006)
Chlamydia trachomatis-derived deubiquitinating enzymes in mammalian cells during infection
Shahram Misaghi et al.
MOLECULAR MICROBIOLOGY (2006)
A simple and robust statistical test for detecting the presence of recombination
TC Bruen et al.
GENETICS (2006)
In vivo and in vitro studies of Chlamydia trachomatis TrpR: DNA interactions
JH Carlson et al.
MOLECULAR MICROBIOLOGY (2006)
Conjunctival chlamydial 16S ribosomal RNA expression in trachoma: Is chlamydial metabolic activity required for disease to develop?
MJ Burton et al.
CLINICAL INFECTIOUS DISEASES (2006)
Inhibition of chlamydiae by primary alcohols correlates with the strain-specific complement of plasticity zone phospholipase D genes
DE Nelson et al.
INFECTION AND IMMUNITY (2006)
Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: Evidence for serovar Da recombination and correlation with tissue tropism
JP Gomes et al.
JOURNAL OF BACTERIOLOGY (2006)
Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains
JH Carlson et al.
INFECTION AND IMMUNITY (2005)
Shotgun proteomic analysis of Chlamydia trachomatis
P Skipp et al.
PROTEOMICS (2005)
Overestimation of complication rates in evaluations of Chlamydia trachomatis screening programmes -: implications for cost-effectiveness analyses
IGM van Valkengoed et al.
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY (2004)
A chlamydial type III translocated protein is tyrosine-phosphorylated at the site of entry and associated with recruitment of actin
DR Clifton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Polymorphisms in the Chlamydia trachomatis cytotoxin locus associated with ocular and genital isolates
JH Carlson et al.
INFECTION AND IMMUNITY (2004)
From the inside out - processing of the Chlamydial autotransporter PmpD and its role in bacterial adhesion and activation of human host cells
W Wehrl et al.
MOLECULAR MICROBIOLOGY (2004)
Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
CS Yu et al.
PROTEIN SCIENCE (2004)
Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis
BW Brunelle et al.
GENOME BIOLOGY (2004)
Which members of a community need antibiotics to control trachoma?: Conjunctival Chlamydia trachomatis infection load in Gambian villages
MJ Burton et al.
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE (2003)
Strategies for control of trachoma:: observational study with quantitative PCR
AW Solomon et al.
LANCET (2003)
Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis
RJ Belland et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Multiple hypothesis testing in microarray experiments
S Dudoit et al.
STATISTICAL SCIENCE (2003)
The structure of the RlmB 23S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot
G Michel et al.
STRUCTURE (2002)
The rlmB gene is essential for formation of Gm2251 in 23S rRNA but not for ribosome maturation in Escherichia coli
JM Lövgren et al.
JOURNAL OF BACTERIOLOGY (2001)
YidC mediates membrane protein insertion in bacteria
JC Samuelson et al.
NATURE (2000)