期刊
G3-GENES GENOMES GENETICS
卷 8, 期 7, 页码 2167-2172出版社
GENETICS SOCIETY AMERICA
DOI: 10.1534/g3.118.200220
关键词
large scale BLAST; bacterial genomes; operon search; BLAST-XYPIot viewer
资金
- CONACYT [CB-2009-128235-Z]
- VIEP-BUAP
One of the most commonly used tools to compare protein or DNA sequences against databases is BLAST. We introduce a web tool that allows the performance of BLAST-searches of protein/ DNA sequences in whole-genome sequenced bacteria/archaea, and displays a large amount of BLAST-results simultaneously. The circular bacterial replicons are projected as horizontal lines with fixed length of 360, representing the degrees of a circle. A coordinate system is created with length of the replicon along the x-axis and the number of replicon used on the y-axis. When a query sequence matches with a gene/ protein of a particular replicon, the BLAST-results are depicted as an x,y position in a specially adapted plot. This tool allows the visualization of the results from the whole data to a particular gene/protein in real time with low computational resources.
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