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Juri Reimand et al.
NUCLEIC ACIDS RESEARCH (2016)
A survey of best practices for RNA-seq data analysis
Ana Conesa et al.
GENOME BIOLOGY (2016)
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
Ruth Pidsley et al.
GENOME BIOLOGY (2016)
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
Kamal Kishore et al.
BMC BIOINFORMATICS (2015)
GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
Koen Herten et al.
BMC BIOINFORMATICS (2015)
Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation
Daofeng Li et al.
METHODS (2015)
Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates
Hao Wu et al.
NUCLEIC ACIDS RESEARCH (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
A Comparison of Genome-Wide DNA Methylation Patterns between Different Vascular Tissues from Patients with Coronary Heart Disease
Maria S. Nazarenko et al.
PLOS ONE (2015)
ChAMP: 450k Chip Analysis Methylation Pipeline
Tiffany J. Morris et al.
BIOINFORMATICS (2014)
MethylSig: a whole genome DNA methylation analysis pipeline
Yongseok Park et al.
BIOINFORMATICS (2014)
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Martin J. Aryee et al.
BIOINFORMATICS (2014)
Genotyping by sequencing for genomic prediction in a soybean breeding population
Diego Jarquin et al.
BMC GENOMICS (2014)
Advances in the profiling of DNA modifications: cytosine methylation and beyond
Nongluk Plongthongkum et al.
NATURE REVIEWS GENETICS (2014)
A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
Hao Feng et al.
NUCLEIC ACIDS RESEARCH (2014)
AFSM sequencing approach: a simple and rapid method for genome-wide SNP and methylation site discovery and genetic mapping
Zhiqiang Xia et al.
SCIENTIFIC REPORTS (2014)
Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding
Jiangfeng He et al.
FRONTIERS IN PLANT SCIENCE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Detection of significantly differentially methylated regions in targeted bisulfite sequencing data
Katja Hebestreit et al.
BIOINFORMATICS (2013)
Stacks: an analysis tool set for population genomics
Julian Catchen et al.
MOLECULAR ECOLOGY (2013)
DNA Methylation Alterations at 5′-CCGG Sites in the Interspecific and Intraspecific Hybridizations Derived from Brassica rapa and B. napus
Wanshan Xiong et al.
PLOS ONE (2013)
Software for Computing and Annotating Genomic Ranges
Michael Lawrence et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies
Stephanie M. Gogarten et al.
BIOINFORMATICS (2012)
Detection and quantification of tissue of origin in salmon and veal products using methylation sensitive AFLPs
Carlos M. Rodriguez Lopez et al.
FOOD CHEMISTRY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
Jesse A. Poland et al.
PLOS ONE (2012)
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
Kasper D. Hansen et al.
GENOME BIOLOGY (2012)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
Accurate genome-scale percentage DNA methylation estimates from microarray data
Martin J. Aryee et al.
BIOSTATISTICS (2011)
The Sequence Read Archive
Rasko Leinonen et al.
NUCLEIC ACIDS RESEARCH (2011)
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
Robert J. Elshire et al.
PLOS ONE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
TASSEL: software for association mapping of complex traits in diverse samples
Peter J. Bradbury et al.
BIOINFORMATICS (2007)