4.8 Article

Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

PGSB PlantsDB: updates to the database framework for comparative plant genome research

Manuel Spannagl et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Identification of a Chlorophyll Dephytylase Involved in Chlorophyll Turnover in Arabidopsis

Yao-Pin Lin et al.

PLANT CELL (2016)

Article Multidisciplinary Sciences

Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation

Zhenzhen Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Genome sequence and analysis of the Japanese morning glory Ipomoea nil

Atsushi Hoshino et al.

NATURE COMMUNICATIONS (2016)

Article Biochemical Research Methods

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

Daniel H. Huson et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Biochemical Research Methods

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

Siavash Mirarab et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simao et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Optimization and cost-saving in tagmentation-based mate-pair library preparation and sequencing

Kaori Tatsumi et al.

BIOTECHNIQUES (2015)

Review Plant Sciences

Horizontal gene transfer in parasitic plants

Charles C. Davis et al.

CURRENT OPINION IN PLANT BIOLOGY (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Genetics & Heredity

Comprehensive variation discovery in single human genomes

Neil I. Weisenfeld et al.

NATURE GENETICS (2014)

Article Multidisciplinary Sciences

Genomic-scale exchange of mRNA between a parasitic plant and its hosts

Gunjune Kim et al.

SCIENCE (2014)

Article Biotechnology & Applied Microbiology

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

Michiel Van Bel et al.

GENOME BIOLOGY (2013)

Article Biochemical Research Methods

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

Maureen Stolzer et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Multidisciplinary Sciences

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato et al.

NATURE (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biotechnology & Applied Microbiology

Toward almost closed genomes with GapFiller

Marten Boetzer et al.

GENOME BIOLOGY (2012)

Article Biochemical Research Methods

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

Guillaume Marcais et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Accelerated Profile HMM Searches

Sean R. Eddy

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

The sequence and de novo assembly of the giant panda genome

Ruiqiang Li et al.

NATURE (2010)

Article Plant Sciences

Mobilization of retrotransposons in synthetic allotetraploid tobacco

M. Petit et al.

NEW PHYTOLOGIST (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

Stephan Ossowski et al.

SCIENCE (2010)

Article Multidisciplinary Sciences

Horizontal Gene Transfer by the Parasitic Plant Striga hermonthica

Satoko Yoshida et al.

SCIENCE (2010)

Review Biochemistry & Molecular Biology

Towards Characterization of the Chloroplast NAD(P)H Dehydrogenase Complex

Marjaana Suorsa et al.

MOLECULAR PLANT (2009)

Article Multidisciplinary Sciences

Exchange of Genetic Material Between Cells in Plant Tissue Grafts

Sandra Stegemann et al.

SCIENCE (2009)

Article Biochemical Research Methods

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

David Ellinghaus et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Plant Sciences

Nitrate transport and signalling

Anthony J. Miller et al.

JOURNAL OF EXPERIMENTAL BOTANY (2007)

Article Biochemistry & Molecular Biology

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

Mikita Suyama et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

An algorithm for progressive multiple alignment of sequences with insertions

A Löytynoja et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemical Research Methods

Automated generation of heuristics for biological sequence comparison

GS Slater et al.

BMC BIOINFORMATICS (2005)