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GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES
Zachariah Gompert et al.
EVOLUTION (2012)
Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)
M. F. R. Resende et al.
GENETICS (2012)
Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs
Marius Roesti et al.
MOLECULAR ECOLOGY (2012)
Genome-wide association genetics of an adaptive trait in lodgepole pine
Thomas L. Parchman et al.
MOLECULAR ECOLOGY (2012)
Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments
M. F. R. Resende et al.
NEW PHYTOLOGIST (2012)
Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
Gancho T. Slavov et al.
NEW PHYTOLOGIST (2012)
Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees
Marcos D. V. Resende et al.
NEW PHYTOLOGIST (2012)
Effects of interspecific recombination on functional traits in trees revealed by metabolomics and genotyping-by-resequencing
Celine Caseys et al.
PLANT ECOLOGY & DIVERSITY (2012)
Inferring Phylogenies from RAD Sequence Data
Benjamin E. R. Rubin et al.
PLOS ONE (2012)
Genomic Selection for Fruit Quality Traits in Apple (Malus x domestica Borkh.)
Satish Kumar et al.
PLOS ONE (2012)
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Brant K. Peterson et al.
PLOS ONE (2012)
SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
Rasmus Nielsen et al.
PLOS ONE (2012)
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
Paul A. Hohenlohe et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
SNP markers trace familial linkages in a cloned population of Pinus taeda-prospects for genomic selection
Jaime Zapata-Valenzuela et al.
TREE GENETICS & GENOMES (2012)
Genotyping-by-Sequencing for Plant Breeding and Genetics
Jesse A. Poland et al.
PLANT GENOME (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Variation in actual relationship as a consequence of Mendelian sampling and linkage
W. G. Hill et al.
GENETICS RESEARCH (2011)
Forest tree genomics: growing resources and applications
David B. Neale et al.
NATURE REVIEWS GENETICS (2011)
Genotype and SNP calling from next-generation sequencing data
Rasmus Nielsen et al.
NATURE REVIEWS GENETICS (2011)
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
John W. Davey et al.
NATURE REVIEWS GENETICS (2011)
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
Robert J. Elshire et al.
PLOS ONE (2011)
Revisiting protein heterozygosity in plants-nucleotide diversity in allozyme coding genes of conifer Pinus sylvestris
Tanja Pyhajarvi et al.
TREE GENETICS & GENOMES (2011)
Genomic selection in forest tree breeding
Dario Grattapaglia et al.
TREE GENETICS & GENOMES (2011)
The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation
Jonathan K. Pritchard et al.
CURRENT BIOLOGY (2010)
Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)
Andrew J. Eckert et al.
GENETICS (2010)
Association Mapping of Quantitative Disease Resistance in a Natural Population of Loblolly Pine (Pinus taeda L.)
Tania Quesada et al.
GENETICS (2010)
Genome-wide association and genomic selection in animal breeding
Ben Hayes et al.
GENOME (2010)
Population genetic inference from genomic sequence variation
John E. Pool et al.
GENOME RESEARCH (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
The genome of the domesticated apple (Malus x domestica Borkh.)
Riccardo Velasco et al.
NATURE GENETICS (2010)
Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis)
Jason A. Holliday et al.
NEW PHYTOLOGIST (2010)
Understanding and using quantitative genetic variation
William G. Hill
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Accuracy of estimated genomic breeding values for wool and meat traits in a multi-breed sheep population
H. D. Daetwyler et al.
ANIMAL PRODUCTION SCIENCE (2010)
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
Paul A. Hohenlohe et al.
PLOS GENETICS (2010)
Epigenetic Regulation of Transposable Elements in Plants
Damon Lisch
ANNUAL REVIEW PLANT BIOLOGY (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Asssociation Genetics of Coastal Douglas Fir (Pseudotsuga menziesu var. menziesii, Pinaceae). I. Cold-Hardiness Related Traits
Andrew J. Eckert et al.
GENETICS (2009)
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
Ryan N. Gutenkunst et al.
PLOS GENETICS (2009)
Population, quantitative and comparative genomics of adaptation in forest trees
David B. Neale et al.
CURRENT OPINION IN PLANT BIOLOGY (2008)
The loci of evolution: How predictable is genetic evolution ?
David L. Stern et al.
EVOLUTION (2008)
Adaptation, migration or extirpation: climate change outcomes for tree populations
Sally N. Aitken et al.
EVOLUTIONARY APPLICATIONS (2008)
Heritability in the genomics era - concepts and misconceptions
Peter M. Visscher et al.
NATURE REVIEWS GENETICS (2008)
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
Nathan A. Baird et al.
PLOS ONE (2008)
Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations
Tanja Pyhajarvi et al.
GENETICS (2007)
TASSEL: software for association mapping of complex traits in diverse samples
Peter J. Bradbury et al.
BIOINFORMATICS (2007)
Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
Michael R. Miller et al.
GENOME RESEARCH (2007)
The cellular and molecular biology of conifer embryogenesis
John Cairney et al.
NEW PHYTOLOGIST (2007)
Gene flow and local adaptation in trees
Outi Savolainen et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2007)
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
G. A. Tuskan et al.
SCIENCE (2006)
Performance of marker-based relatedness estimators in natural populations of outbred vertebrates
Katalin Csillery et al.
GENETICS (2006)
Forest-tree population genomics and adaptive evolution
SC Gonzalez-Martinez et al.
NEW PHYTOLOGIST (2006)
Marker-based quantitative genetics in the wild?: The heritability and genetic correlation of chemical defenses in eucalyptus
RL Andrew et al.
GENETICS (2005)
Testing marker-based estimates of heritability in the wild
DW Coltman
MOLECULAR ECOLOGY (2005)
The use of marker-based relationship information to estimate the heritability of body weight in a natural population: a cautionary tale
SC Thomas et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2002)
Marker-inferred relatedness as a tool for detecting heritability in nature
K Ritland
MOLECULAR ECOLOGY (2000)