期刊
SYSTEMATIC BIOLOGY
卷 67, 期 5, 页码 901-904出版社
OXFORD UNIV PRESS
DOI: 10.1093/sysbio/syy032
关键词
Bayesian inference; Markov chain Monte Carlo; phylogenetics; visualization
资金
- Wellcome Trust [206298/Z/17/Z]
- European Union [725422-RESERVOIRDOCS]
- National Science Foundation through grant DMS [1264153]
- National Institutes of Health [R01 AI107034, U19 AI135995]
- Marsden grant [UOA1611]
- Interne Fondsen KU Leuven / Internal Funds KU Leuven
- Direct For Mathematical & Physical Scien
- Division Of Mathematical Sciences [1264153] Funding Source: National Science Foundation
Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data. Visualizing and analyzing the MCMC-generated samples from the posterior distribution is a key step in any non-trivial Bayesian inference. We present the software package Tracer (version 1.7) for visualizing and analyzing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, multivariate visualization, demographic trajectory reconstruction, conditional posterior distribution summary, and more.
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