相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。GPCRdb in 2018: adding GPCR structure models and ligands
Gaspar Pandy-Szekeres et al.
NUCLEIC ACIDS RESEARCH (2018)
Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the ' retro' approach to protein engineering
Yosephine Gumulya et al.
BIOCHEMICAL JOURNAL (2017)
Evolution of nonspectral rhodopsin function at high altitudes
Gianni M. Castiglione et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Evolutionary steps involving counterion displacement in a tunicate opsin
Keiichi Kojima et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Spectral Tuning Mechanism of Primate Blue-sensitive Visual Pigment Elucidated by FTIR Spectroscopy
Kota Katayama et al.
SCIENTIFIC REPORTS (2017)
Optogenetic interrogation reveals separable G-protein-dependent and -independent signalling linking G-protein-coupled receptors to the circadian oscillator
Helena J. Bailes et al.
BMC BIOLOGY (2017)
Structural role of the T94I rhodopsin mutation in congenital stationary night blindness
Ankita Singhal et al.
EMBO REPORTS (2016)
PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories
Victor Hanson-Smith et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution
Michaela Liegertova et al.
SCIENTIFIC REPORTS (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Epistatic Adaptive Evolution of Human Color Vision
Shozo Yokoyama et al.
PLOS GENETICS (2014)
Molecular signatures of G-protein-coupled receptors
A. J. Venkatakrishnan et al.
NATURE (2013)
Human melanopsin forms a pigment maximally sensitive to blue light (λmax ≈ 479 nm) supporting activation of Gq/11 and Gi/o signalling cascades
Helena J. Bailes et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
Robert B. Best et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Reproducible and Sustained Regulation of Gαs Signalling Using a Metazoan Opsin as an Optogenetic Tool
Helena J. Bailes et al.
PLOS ONE (2012)
Metazoan opsin evolution reveals a simple route to animal vision
Roberto Feuda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Shedding new light on opsin evolution
Megan L. Porter et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Box Jellyfish Use Terrestrial Visual Cues for Navigation
Anders Garm et al.
CURRENT BIOLOGY (2011)
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
Yongchao Liu et al.
BIOINFORMATICS (2010)
Robustness of Ancestral Sequence Reconstruction to Phylogenetic Uncertainty
Victor Hanson-Smith et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Multiple functions of Schiff base counterion in rhodopsins
Kei Tsutsui et al.
PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
The Magnitude of the Light-induced Conformational Change in Different Rhodopsins Correlates with Their Ability to Activate G Proteins
Hisao Tsukamoto et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Temporally precise in vivo control of intracellular signalling
Raag D. Airan et al.
NATURE (2009)
Evolution and functional diversity of jellyfish opsins
Hiroshi Suga et al.
CURRENT BIOLOGY (2008)
Swim pacemakers in box jellyfish are modulated by the visual input
A. Garm et al.
JOURNAL OF COMPARATIVE PHYSIOLOGY A-NEUROETHOLOGY SENSORY NEURAL AND BEHAVIORAL PHYSIOLOGY (2008)
An improved general amino acid replacement matrix
Si Quang Le et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Crystal structure of squid rhodopsin
Midori Murakami et al.
NATURE (2008)
Jellyfish vision starts with cAMP signaling mediated by opsin-Gs cascade
Mitsumasa Koyanagi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Visually guided obstacle avoidance in the box jellyfish Tripedalia cystophora and Chiropsella bronzie
A. Garm et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Structural changes in the Schiff base region of squid rhodopsin upon photoisomerization studied by low-temperature FTIR spectroscopy
T Ota et al.
BIOCHEMISTRY (2006)
Scalable molecular dynamics with NAMD
JC Phillips et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
Advanced optics in a jellyfish eye
DE Nilsson et al.
NATURE (2005)
ProtTest: selection of best-fit models of protein evolution
F Abascal et al.
BIOINFORMATICS (2005)
Counterion displacement in the molecular evolution of the rhodopsin family
A Terakita et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Convergent evolution of behavior in an adaptive radiation of Hawaiian web-building spiders
TA Blackledge et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Structure of bovine rhodopsin in a trigonal crystal form
J Li et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Resurrecting ancient genes: experimental analysis of extinct molecules
JW Thornton
NATURE REVIEWS GENETICS (2004)
Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin
ECY Yan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Function of extracellular loop 2 in rhodopsin: Glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II
ECY Yan et al.
BIOCHEMISTRY (2002)
Highly conserved glutamic acid in the extracellular IV-V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family
A Terakita et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Molecular determinants of ligand binding to the human melanocortin-4 receptor
Y Yang et al.
BIOCHEMISTRY (2000)
In search of the visual pigment template
VI Govardovskii et al.
VISUAL NEUROSCIENCE (2000)
Analysis of connexin phosphorylation sites
CD Cooper et al.
METHODS (2000)
分享论文
