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Brent C. Emerson et al.
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Brent C. Emerson et al.
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Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa
Miles W. Carroll et al.
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Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic
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Timothy G. Vaughan et al.
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Sebastian Duchene et al.
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Stephen K. Gire et al.
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BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
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Tanja Stadler et al.
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Tanja Stadler et al.
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Tanja Stadler et al.
JOURNAL OF THEORETICAL BIOLOGY (2012)
Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty
Guy Baele et al.
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Time-dependent rates of molecular evolution
Simon Y. W. Ho et al.
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Rachel S. Schwartz et al.
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The Total Branch Length of Sample Genealogies in Populations of Variable Size
A. Eriksson et al.
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Jennifer Ripplinger et al.
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Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods
Miguel Navascues et al.
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Bayesian analysis of elapsed times in continuous-time Markov chains
Marco A. R. Ferreira et al.
CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE (2008)
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Scot A. Kelchner et al.
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Michael Woodhams
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SYW Ho et al.
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Bayesian coalescent inference of past population dynamics from molecular sequences
AJ Drummond et al.
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Measurably evolving populations
AJ Drummond et al.
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Identifiability of parameters in MCMC Bayesian inference of phylogeny
B Rannala
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Rates of evolution in ancient DNA from Adelie penguins
DM Lambert et al.
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MRBAYES: Bayesian inference of phylogenetic trees
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