4.8 Article

Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

Oxygen as a driver of gut dysbiosis

Fabian Rivera-Chavez et al.

FREE RADICAL BIOLOGY AND MEDICINE (2017)

Article Biochemical Research Methods

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

Shea N. Gardner et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

Stephen J. Salipante et al.

GENOME RESEARCH (2015)

Article Gastroenterology & Hepatology

Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota

Lindsey Albenberg et al.

GASTROENTEROLOGY (2014)

Article Mathematical & Computational Biology

IFIM: a database of integrated fitness information for microbial genes

Wen Wei et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Biochemistry & Molecular Biology

The dynamics of gut-associated microbial communities during inflammation

Sebastian E. Winter et al.

EMBO REPORTS (2013)

Article Multidisciplinary Sciences

A metagenome-wide association study of gut microbiota in type 2 diabetes

Junjie Qin et al.

NATURE (2012)

Article Evolutionary Biology

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

Daniel H. Huson et al.

SYSTEMATIC BIOLOGY (2012)

Review Immunology

Adaptive immunity in the host-microbiota dialog

T. Feng et al.

MUCOSAL IMMUNOLOGY (2011)

Article Multidisciplinary Sciences

Human nutrition, the gut microbiome and the immune system

Andrew L. Kau et al.

NATURE (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Article Multidisciplinary Sciences

Succession of microbial consortia in the developing infant gut microbiome

Jeremy E. Koenig et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Microbiology

Human faecal microbiota display variable patterns of glycerol metabolism

Rosemarie De Weirdt et al.

FEMS MICROBIOLOGY ECOLOGY (2010)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

Modulation of Shigella virulence in response to available oxygen in vivo

Benoit Marteyn et al.

NATURE (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media

Tom M. Conrad et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

Carlotta De Filippo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Review Gastroenterology & Hepatology

Microbes in Gastrointestinal Health and Disease

Andrew S. Neish

GASTROENTEROLOGY (2009)

Review Nutrition & Dietetics

Composition and function of the human-associated microbiota

Elisabeth M. Bik

NUTRITION REVIEWS (2009)

Article Multidisciplinary Sciences

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

Daniel N. Frank et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Gastroenterology & Hepatology

Patterns of GI disease in adulthood associated with mutations in the CFTR gene

Michael Wilschanski et al.

Article Multidisciplinary Sciences

Microbial ecology - Human gut microbes associated with obesity

Ruth E. Ley et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

Sex and virulence in Escherichia coli:: an evolutionary perspective

Thierry Wirth et al.

MOLECULAR MICROBIOLOGY (2006)

Article Gastroenterology & Hepatology

Long term nutritional rehabilitation by gastrostomy in Israeli patients with cystic fibrosis: Clinical outcome in advanced pulmonary disease

O Efrati et al.

JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION (2006)

Article Multidisciplinary Sciences

Diversity of the human intestinal microbial flora

PB Eckburg et al.

SCIENCE (2005)

Article Gastroenterology & Hepatology

Molecular characterization of rectal mucosa-associated bacterial flora in inflammatory bowel disease

M Mylonaki et al.

INFLAMMATORY BOWEL DISEASES (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Gastroenterology & Hepatology

High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease

A Darfeuille-Michaud et al.

GASTROENTEROLOGY (2004)

Article Gastroenterology & Hepatology

Enhanced Escherichia coli adherence and invasion in Crohn's disease and colon cancer

HM Martin et al.

GASTROENTEROLOGY (2004)

Article Gastroenterology & Hepatology

Mucosal flora in inflammatory bowel disease

A Swidsinski et al.

GASTROENTEROLOGY (2002)