相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Meta-transcriptomics and the evolutionary biology of RNA viruses
Mang Shi et al.
VIRUS RESEARCH (2018)
The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification
Pakorn Aiewsakun et al.
MICROBIOME (2018)
Estimating evolutionary rates in giant viruses using ancient genomes
Sebastian Duchene et al.
VIRUS EVOLUTION (2018)
Endemic cyanophages and the puzzle of phage-bacteria coevolution
Otto X. Cordero
ENVIRONMENTAL MICROBIOLOGY (2017)
Biological Species Are Universal across Life's Domains
Louis-Marie Bobay et al.
GENOME BIOLOGY AND EVOLUTION (2017)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
Virus taxonomy in the age of metagenomics
Peter Simmonds et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families
Jemma L. Geoghegan et al.
PLOS PATHOGENS (2017)
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
Benjamin Bolduc et al.
PEERJ (2017)
Bacteriophage evolution differs by host, lifestyle and genome
Travis N. Mavrich et al.
NATURE MICROBIOLOGY (2017)
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
Ann C. Gregory et al.
BMC GENOMICS (2016)
Genomic diversification of marine cyanophages into stable ecotypes
Marcia F. Marston et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements
Jaime Iranzo et al.
JOURNAL OF VIROLOGY (2016)
Ecological speciation of bacteriophage lambda in allopatry and sympatry
Justin R. Meyer et al.
SCIENCE (2016)
Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution
Eduardo Corel et al.
TRENDS IN MICROBIOLOGY (2016)
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
Camille Roux et al.
PLOS BIOLOGY (2016)
Computational approaches to predict bacteriophage-host relationships
Robert A. Edwards et al.
FEMS MICROBIOLOGY REVIEWS (2016)
Methods for virus classification and the challenge of incorporating metagenomic sequence data
Peter Simmonds
JOURNAL OF GENERAL VIROLOGY (2015)
Inferring Speciation Processes from Patterns of Natural Variation in Microbial Genomes
David J. Krause et al.
SYSTEMATIC BIOLOGY (2015)
Microbial Speciation
B. Jesse Shapiro et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2015)
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Welkin H. Pope et al.
ELIFE (2015)
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Welkin H. Pope et al.
ELIFE (2015)
Comparative population genomics in animals uncovers the determinants of genetic diversity
J. Romiguier et al.
NATURE (2014)
Explaining microbial genomic diversity in light of evolutionary ecology
Otto X. Cordero et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Defining viral species: making taxonomy useful
A. Townsend Peterson
VIROLOGY JOURNAL (2014)
Genomic and Functional Characteristics of Human Cytomegalovirus Revealed by Next-Generation Sequencing
Steven Sijmons et al.
VIRUSES-BASEL (2014)
Recently agreed changes to the International Code of Virus Classification and Nomenclature
M. J. Adams et al.
ARCHIVES OF VIROLOGY (2013)
The Adaptation of Temperate Bacteriophages to Their Host Genomes
Louis-Marie Bobay et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Molecular hyperdiversity and evolution in very large populations
Asher D. Cutter et al.
MOLECULAR ECOLOGY (2013)
Manipulating or Superseding Host Recombination Functions: A Dilemma That Shapes Phage Evolvability
Louis-Marie Bobay et al.
PLOS GENETICS (2013)
Population Genomics of Early Events in the Ecological Differentiation of Bacteria
B. Jesse Shapiro et al.
SCIENCE (2012)
Patterns of Gene Flow Define Species of Thermophilic Archaea
Hinsby Cadillo-Quiroz et al.
PLOS BIOLOGY (2012)
Why do RNA viruses recombine?
Etienne Simon-Loriere et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Family level phylogenies reveal modes of macroevolution in RNA viruses
Andrew Kitchen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The chastity of amoebae: re-evaluating evidence for sex in amoeboid organisms
Daniel J. G. Lahr et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Variability and recombination of clinical human cytomegalovirus strains from transplantation recipients
Muriel Faure-Della Corte et al.
JOURNAL OF CLINICAL VIROLOGY (2010)
Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size
Graham F. Hatfull et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
Order to the Viral Universe
Mart Krupovic et al.
JOURNAL OF VIROLOGY (2010)
Bacteriophage resistance mechanisms
Simon J. Labrie et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Detection of novel recombinases in bacteriophage genomes unveils Rad52, Rad51 and Gp2.5 remote homologs
Anne Lopes et al.
NUCLEIC ACIDS RESEARCH (2010)
Recombination and microdiversity in coastal marine cyanophages
Marcia F. Marston et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
A comparison of homologous recombination rates in bacteria and archaea
Michiel Vos et al.
ISME JOURNAL (2009)
Shifting the genomic gold standard for the prokaryotic species definition
Michael Richter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Reticulate representation of evolutionary and functional relationships between phage genomes
Gipsi Lima-Mendez et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in Trichomonas vaginalis
Shehre-Banoo Malik et al.
PLOS ONE (2008)
Diversity among the tailed-bacteriophages that infect the Enterobacteriaceae
Sherwood R. Casjens
RESEARCH IN MICROBIOLOGY (2008)
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation
Sheri L. Simmons et al.
PLOS BIOLOGY (2008)
The λ Red proteins promote efficient recombination between diverged sequences:: Implications for bacteriophage genome mosaicism
Jann T. Martinsohn et al.
PLOS GENETICS (2008)
Identifying bacterial genes and endosymbiont DNA with Glimmer
Arthur L. Delcher et al.
BIOINFORMATICS (2007)
Pattern pluralism and the Tree of Life hypothesis
W. Ford Doolittle et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Analysis of the phage sequence space: The benefit of structured information
Gipsi Lima-Mendez et al.
VIROLOGY (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Application of phylogenetic networks in evolutionary studies
DH Huson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A phylogenomic inventory of meiotic genes:: Evidence for sex in Giardia and an early eukaryotic origin of meiosis
MA Ramesh et al.
CURRENT BIOLOGY (2005)
Phage-host interaction:: an ecological perspective
S Chibani-Chennoufi et al.
JOURNAL OF BACTERIOLOGY (2004)
The role of DNA recombination in herpes simplex virus DNA replication
DE Wilkinson et al.
IUBMB LIFE (2003)
The Phage Proteomic Tree: a genome-based taxonomy for phage
F Rohwer et al.
JOURNAL OF BACTERIOLOGY (2002)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Sequence analysis of porcine adenovirus serotype 5 fibre gene: Evidence for recombination
M Nagy et al.
VIRUS GENES (2002)
Factors regulating template switch in vitro by viral RNA-dependent RNA polymerases:: Implications for RNA-RNA recombination
MJ Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages
RJ Juhala et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
分享论文
