4.8 Article

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Sergey Koren et al.

GENOME RESEARCH (2017)

Article Biochemical Research Methods

Detecting DNA cytosine methylation using nanopore sequencing

Jared T. Simpson et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Mapping DNA methylation with high-throughput nanopore sequencing

Arthur C. Rand et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms

Francesca Giordano et al.

SCIENTIFIC REPORTS (2017)

Review Biotechnology & Applied Microbiology

The sequence of sequencers: The history of sequencing DNA

James M. Heather et al.

GENOMICS (2016)

Review Genetics & Heredity

Coming of age: ten years of next-generation sequencing technologies

Sara Goodwin et al.

NATURE REVIEWS GENETICS (2016)

Article Multidisciplinary Sciences

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

Ivan Sovic et al.

NATURE COMMUNICATIONS (2016)

Article Biotechnology & Applied Microbiology

JBrowse: a dynamic web platform for genome visualization and analysis

Robert Buels et al.

GENOME BIOLOGY (2016)

Article Biotechnology & Applied Microbiology

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

Miten Jain et al.

GENOME BIOLOGY (2016)

Review Genetics & Heredity

Insights from 20 years of bacterial genome sequencing

Miriam Land et al.

FUNCTIONAL & INTEGRATIVE GENOMICS (2015)

Article Biochemistry & Molecular Biology

Core promoter sequence in yeast is a major determinant of expression level

Shai Lubliner et al.

GENOME RESEARCH (2015)

Article Biochemistry & Molecular Biology

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome

Sara Goodwin et al.

GENOME RESEARCH (2015)

Review Genetics & Heredity

PacBio Sequencing and Its Applications

Anthony Rhoads et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2015)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Revisiting Global Gene Expression Analysis

Jakob Loven et al.

Editorial Material Biochemical Research Methods

De novo genome assembly: what every biologist should know

Monya Baker

NATURE METHODS (2012)

Review Genetics & Heredity

Repetitive DNA and next-generation sequencing: computational challenges and solutions

Todd J. Treangen et al.

NATURE REVIEWS GENETICS (2012)

Review Genetics & Heredity

A beginner's guide to eukaryotic genome annotation

Mark Yandell et al.

NATURE REVIEWS GENETICS (2012)

Review Pharmacology & Pharmacy

Next-generation sequencing and large genome assemblies

Joseph Henson et al.

PHARMACOGENOMICS (2012)

Article Biochemistry & Molecular Biology

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

Gerton Lunter et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Adaptive seeds tame genomic sequence comparison

Szymon M. Kielbasa et al.

GENOME RESEARCH (2011)

Article Genetics & Heredity

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

A. P. Jason de Koning et al.

PLOS GENETICS (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Direct detection of DNA methylation during single-molecule, real-time sequencing

Benjamin A. Flusberg et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Review Genetics & Heredity

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang et al.

NATURE REVIEWS GENETICS (2009)

Article Multidisciplinary Sciences

The transcriptional landscape of the yeast genome defined by RNA sequencing

Ugrappa Nagalakshmi et al.

SCIENCE (2008)

Article Genetics & Heredity

An increase in mitochondrial DNA promotes nuclear DNA replication in yeast

Heidi M. Blank et al.

PLOS GENETICS (2008)

Review Genetics & Heredity

DNA methylation and human disease

KD Robertson

NATURE REVIEWS GENETICS (2005)

Article Multidisciplinary Sciences

Polyadenylation of rRNA in Saccharomyces cerevisiae

L Kuai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

BLAT - The BLAST-like alignment tool

WJ Kent

GENOME RESEARCH (2002)

Article Biotechnology & Applied Microbiology

An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains

JP van Dijken et al.

ENZYME AND MICROBIAL TECHNOLOGY (2000)