相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Detecting DNA cytosine methylation using nanopore sequencing
Jared T. Simpson et al.
NATURE METHODS (2017)
Mapping DNA methylation with high-throughput nanopore sequencing
Arthur C. Rand et al.
NATURE METHODS (2017)
Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
Ashley Byrne et al.
NATURE COMMUNICATIONS (2017)
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Benjamin Istace et al.
GIGASCIENCE (2017)
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms
Francesca Giordano et al.
SCIENTIFIC REPORTS (2017)
The sequence of sequencers: The history of sequencing DNA
James M. Heather et al.
GENOMICS (2016)
Coming of age: ten years of next-generation sequencing technologies
Sara Goodwin et al.
NATURE REVIEWS GENETICS (2016)
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
Ivan Sovic et al.
NATURE COMMUNICATIONS (2016)
JBrowse: a dynamic web platform for genome visualization and analysis
Robert Buels et al.
GENOME BIOLOGY (2016)
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
Miten Jain et al.
GENOME BIOLOGY (2016)
Insights from 20 years of bacterial genome sequencing
Miriam Land et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2015)
Core promoter sequence in yeast is a major determinant of expression level
Shai Lubliner et al.
GENOME RESEARCH (2015)
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
Sara Goodwin et al.
GENOME RESEARCH (2015)
PacBio Sequencing and Its Applications
Anthony Rhoads et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species
Floriana Capuano et al.
ANALYTICAL CHEMISTRY (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
Joshua Quick et al.
GIGASCIENCE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods
Leif Varemo et al.
NUCLEIC ACIDS RESEARCH (2013)
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
Mark J. Chaisson et al.
BMC BIOINFORMATICS (2012)
Revisiting Global Gene Expression Analysis
Jakob Loven et al.
CELL (2012)
De novo genome assembly: what every biologist should know
Monya Baker
NATURE METHODS (2012)
Repetitive DNA and next-generation sequencing: computational challenges and solutions
Todd J. Treangen et al.
NATURE REVIEWS GENETICS (2012)
A beginner's guide to eukaryotic genome annotation
Mark Yandell et al.
NATURE REVIEWS GENETICS (2012)
De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology
Jurgen F. Nijkamp et al.
MICROBIAL CELL FACTORIES (2012)
A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
Intawat Nookaew et al.
NUCLEIC ACIDS RESEARCH (2012)
Next-generation sequencing and large genome assemblies
Joseph Henson et al.
PHARMACOGENOMICS (2012)
Polyadenylation-Dependent Control of Long Noncoding RNA Expression by the Poly(A)-Binding Protein Nuclear 1
Yves B. Beaulieu et al.
PLOS GENETICS (2012)
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
Gerton Lunter et al.
GENOME RESEARCH (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
A. P. Jason de Koning et al.
PLOS GENETICS (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications
Jose Manuel Otero et al.
BMC GENOMICS (2010)
Direct detection of DNA methylation during single-molecule, real-time sequencing
Benjamin A. Flusberg et al.
NATURE METHODS (2010)
Characterization of different promoters for designing a new expression vector in Saccharomyces cerevisiae
Siavash Partow et al.
YEAST (2010)
Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
Andre B. Canelas et al.
NATURE COMMUNICATIONS (2010)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
The transcriptional landscape of the yeast genome defined by RNA sequencing
Ugrappa Nagalakshmi et al.
SCIENCE (2008)
An increase in mitochondrial DNA promotes nuclear DNA replication in yeast
Heidi M. Blank et al.
PLOS GENETICS (2008)
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
M Stanke et al.
BMC BIOINFORMATICS (2006)
DNA methylation and human disease
KD Robertson
NATURE REVIEWS GENETICS (2005)
Polyadenylation of rRNA in Saccharomyces cerevisiae
L Kuai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
BLAT - The BLAST-like alignment tool
WJ Kent
GENOME RESEARCH (2002)
An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains
JP van Dijken et al.
ENZYME AND MICROBIAL TECHNOLOGY (2000)