4.8 Article

TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Integrative classification of human coding and noncoding genes through RNA metabolism profiles

Neelanjan Multherjee et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Integrative classification of human coding and noncoding genes through RNA metabolism profiles

Neelanjan Multherjee et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Computer Science, Interdisciplinary Applications

Stan: A Probabilistic Programming Language

Bob Carpenter et al.

JOURNAL OF STATISTICAL SOFTWARE (2017)

Article Biochemical Research Methods

Metabolic labeling and recovery of nascent RNA to accurately quantify mRNA stability

Joseph Russo et al.

METHODS (2017)

Article Biochemical Research Methods

Nm-seq maps 2′-O-methytation sites in human mRNA with base precision

Qing Dai et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Thiol-linked alkylation of RNA to assess expression dynamics

Veronika A. Herzog et al.

NATURE METHODS (2017)

Review Genetics & Heredity

RNA mis-splicing in disease

Marina M. Scotti et al.

NATURE REVIEWS GENETICS (2016)

Article Biochemistry & Molecular Biology

Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation

Dig B. Mahat et al.

MOLECULAR CELL (2016)

Article Multidisciplinary Sciences

TT-seq maps the human transient transcriptome

Bjorn Schwalb et al.

SCIENCE (2016)

Article Biochemistry & Molecular Biology

Tracking Distinct RNA Populations Using Efficient and Reversible Covalent Chemistry

Erin E. Duffy et al.

MOLECULAR CELL (2015)

Article Biotechnology & Applied Microbiology

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation

Dimos Gaidatzis et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

Nathan A. Siegfried et al.

NATURE METHODS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Multidisciplinary Sciences

Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing

Hojoong Kwak et al.

SCIENCE (2013)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Nascent transcript sequencing visualizes transcription at nucleotide resolution

L. Stirling Churchman et al.

NATURE (2011)

Article Multidisciplinary Sciences

Global quantification of mammalian gene expression control

Bjoern Schwanhaeusser et al.

NATURE (2011)

Article Biotechnology & Applied Microbiology

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

Michal Rabani et al.

NATURE BIOTECHNOLOGY (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Hematology

Mutations of polycomb-associated gene ASXL1 in myelodysplastic syndromes and chronic myelomonocytic leukaemia

Veronique Gelsi-Boyer et al.

BRITISH JOURNAL OF HAEMATOLOGY (2009)

Article Biochemistry & Molecular Biology

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

Caroline C. Friedel et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

A wave of nascent transcription on activated human genes

Youichiro Wada et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Dynamic remodelling of human 7SK snRNP controls the nuclear level of active P-TEFb

Elodie Van Herreweghe et al.

EMBO JOURNAL (2007)

Article Biochemistry & Molecular Biology

PANTHER: A library of protein families and subfamilies indexed by function

PD Thomas et al.

GENOME RESEARCH (2003)