相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Ten Simple Rules for Developing Usable Software in Computational Biology
Markus List et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Software in the scientific literature: Problems with seeing, finding, and using software mentioned in the biology literature
James Howison et al.
JOURNAL OF THE ASSOCIATION FOR INFORMATION SCIENCE AND TECHNOLOGY (2016)
Molecular adaptation of ammonia monooxygenase during independent pH specialization in Thaumarchaeota
Daniel J. Macqueen et al.
MOLECULAR ECOLOGY (2016)
Viruses are a dominant driver of protein adaptation in mammals
David Enard et al.
ELIFE (2016)
Evolution and Spread of Ebola Virus in Liberia, 2014-2015
Jason T. Ladner et al.
CELL HOST & MICROBE (2015)
Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality
Xiaofan Zhou et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida
Imran Khan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Gene-Wide Identification of Episodic Selection
Ben Murrell et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
Martin D. Smith et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
RELAX: Detecting Relaxed Selection in a Phylogenetic Framework
Joel O. Wertheim et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Best Practices for Scientific Computing
Greg Wilson et al.
PLOS BIOLOGY (2014)
Intrasubtype Reassortments Cause Adaptive Amino Acid Replacements in H3N2 Influenza Genes
Alexey D. Neverov et al.
PLOS GENETICS (2014)
FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection
Ben Murrell et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Ten Simple Rules for the Open Development of Scientific Software
Andreas Prlic et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Detecting Individual Sites Subject to Episodic Diversifying Selection
Ben Murrell et al.
PLOS GENETICS (2012)
Purifying Selection Can Obscure the Ancient Age of Viral Lineages
Joel O. Wertheim et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Evolutionary Fingerprinting of Genes
Sergei L. Kosakovsky Pond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
Jeremy Goecks et al.
GENOME BIOLOGY (2010)
Positive Selection Pressure Introduces Secondary Mutations at Gag Cleavage Sites in Human Immunodeficiency Virus Type 1 Harboring Major Protease Resistance Mutations
Soren Banke et al.
JOURNAL OF VIROLOGY (2009)
A single positively selected West Nile viral mutation confers increased virogenesis in American crows
Aaron C. Brault et al.
NATURE GENETICS (2007)
Robust inference of positive selection from recombining coding sequences
Konrad Scheffler et al.
BIOINFORMATICS (2006)
Automated phylogenetic detection of recombination using a genetic algorithm
Sergei L. Kosakovsky Pond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Site-to-site variation of synonymous substitution rates
SK Pond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
SLK Pond et al.
BIOINFORMATICS (2005)
Not so different after all: A comparison of methods for detecting amino acid sites under selection
SLK Pond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
HyPhy: hypothesis testing using phylogenies
SLK Pond et al.
BIOINFORMATICS (2005)
分享论文
