4.1 Article

Plant Materials are Sustainable Substrates Supporting New Technologies of Plant-Only-Based Culture Media for in vitro Culturing of the Plant Microbiota

期刊

MICROBES AND ENVIRONMENTS
卷 33, 期 1, 页码 40-49

出版社

JAPANESE SOC MICROBIAL ECOLOGY, DEPT BIORESOURCE SCIENCE
DOI: 10.1264/jsme2.ME17135

关键词

plant-only-based culture media; plant microbiome/microbiota; wild desert barley; microbial biomass; rhizobacteria culturability

资金

  1. Egyptian Ministry of Agriculture and Land Reclamation [NS-07-15]
  2. German Academic Exchange Service (DAAD)

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In order to improve the culturabilitv and biomass production of rhizobactcria, we previously introduced plant-only-based culture media. We herein attempted to widen the scope of plant materials suitable for the preparation of plant-only-based culture media. We chemically analyzed the refuse of turfgrass, cactus, and clover They were sufficiently rich to support good in vitro growth by rhizobacteria isolates representing Proteobacteri a and Firtnicutes. They were also adequate and efficient to produce a cell biomass in liquid batch cultures. These culture media were as sufficient as artificial culture media for the cultivation and recovery of the in situ rhizobacteria of barley (Ilordeum Inurinum L.). Based on culture-dependent (CFU plate counting) and culture-independent analyses (qPCR), mowed turfgrass, in particular, supported the highest culturable population of barley endophytes. representing >16% of the total bacterial number quantified with qPCR. This accurately reflected the endophytic community composition, in terms of diversity indices (S'. H', and D') based on PCR-DGGE, and clustered the plant culture media together with the qPCR root populations away from the artificial culture media. Despite the promiscuous nature of the plant materials tested to culture the plant microbiome. our results indicated that plant materials of a homologous nature to the tested host plant, at least at the family level, and/or of the same environment were more likely to be selected. Plant-only-based culture media require further refinements in order to provide selectivity for the in vitro growth of members of the plant microbiome. particularly difficult-to-culture bacteria. This will provide insights into their hidden roles in the environment and support future culturomic studies.

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