4.5 Article

CRITICAL TRANSITIONS IN A MODEL OF A GENETIC REGULATORY SYSTEM

期刊

MATHEMATICAL BIOSCIENCES AND ENGINEERING
卷 11, 期 4, 页码 723-740

出版社

AMER INST MATHEMATICAL SCIENCES-AIMS
DOI: 10.3934/mbe.2014.11.723

关键词

Gene regulatory networks; critical transitions; stochastic differential equations; persistence diagrams

资金

  1. Mathematics and Climate Research Network through National Science Foundation [DMS-0940363]
  2. NSF [DMS-1201357]
  3. National Cancer Institute [P20 CA157069]
  4. Fund for Math of the IAS

向作者/读者索取更多资源

We consider a model for substrate-depletion oscillations in genetic systems, based on a stochastic differential equation with a slowly evolving external signal. We show the existence of critical transitions in the system. We apply two methods to numerically test the synthetic time series generated by the system for early indicators of critical transitions: a detrended fluctuation analysis method, and a novel method based on topological data analysis (persistence diagrams).

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