4.7 Article

Perspective: Maximum caliber is a general variational principle for dynamical systems

期刊

JOURNAL OF CHEMICAL PHYSICS
卷 148, 期 1, 页码 -

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AMER INST PHYSICS
DOI: 10.1063/1.5012990

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资金

  1. National Science Foundation [1205881, 1149992]
  2. Laufer Center
  3. ARO from the Mechanical Sciences Division [66548-EG]
  4. Research Corporation for Science Advancement
  5. PROF from the University of Denver
  6. Direct For Biological Sciences
  7. Div Of Molecular and Cellular Bioscience [1149992] Funding Source: National Science Foundation
  8. Division Of Physics
  9. Direct For Mathematical & Physical Scien [1205881] Funding Source: National Science Foundation

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We review here Maximum Caliber (Max Cal), a general variational principle for inferring distributions of paths in dynamical processes and networks. Max Cal is to dynamical trajectories what the principle of maximum entropy is to equilibrium states or stationary populations. In Max Cal, you maximize a path entropy over all possible pathways, subject to dynamical constraints, in order to predict relative path weights. Many well-known relationships of non-equilibrium statistical physics-such as the Green-Kubo fluctuation-dissipation relations, Onsager's reciprocal relations, and Prigogine's minimum entropy production-are limited to near-equilibrium processes. Max Cal is more general. While it can readily derive these results under those limits, Max Cal is also applicable far from equilibrium. We give examples of Max Cal as a method of inference about trajectory distributions from limited data, finding reaction coordinates in bio-molecular simulations, and modeling the complex dynamics of non-thermal systems such as gene regulatory networks or the collective firing of neurons. We also survey its basis in principle and some limitations. (c) 2018 Author(s).

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