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Charles T. Parker et al.
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Imchang Lee et al.
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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
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Draft genome of Leisingera aquaemixtae CECT 8399T, a member of the Roseobacter clade isolated from a junction of fresh and ocean water in Jeju Island, South Korea
Lidia Rodrigo-Torres et al.
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Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
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Marten Boetzer et al.
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Long-term stability of entomopathogenic nematode spatial patterns in soil as measured by sentinel insects and real-time PCR assays
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Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
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Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
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