4.6 Review

Assessing human B cell repertoire diversity and convergence

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Ensembl 2018

Daniel R. Zerbino et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biotechnology & Applied Microbiology

Functional interrogation and mining of natively paired human VH: VL antibody repertoires

Bo Wang et al.

NATURE BIOTECHNOLOGY (2018)

Article Biochemistry & Molecular Biology

A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite

Neville K. Kisalu et al.

NATURE MEDICINE (2018)

Article Multidisciplinary Sciences

High-throughput immune repertoire analysis with IGoR

Quentin Marcou et al.

NATURE COMMUNICATIONS (2018)

Article Biochemical Research Methods

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design

Jared Adolf-Bryfogle et al.

PLOS COMPUTATIONAL BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Structural and molecular analysis of a protective epitope of Lyme disease antigen OspA and antibody interactions

Shivender Shandilya et al.

JOURNAL OF MOLECULAR RECOGNITION (2017)

Article Biochemical Research Methods

Modeling and docking of antibody structures with Rosetta

Brian D. Weitzner et al.

NATURE PROTOCOLS (2017)

Article Multidisciplinary Sciences

Structural basis for antibody recognition of the NANP repeats in Plasmodium falciparum circumsporozoite protein

David Oyen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Biochemistry & Molecular Biology

Using homology modeling to interrogate binding affinity in neutralization of ricin toxin by a family of single domain antibodies

Andrea Bazzoli et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2017)

Review Immunology

Novel Approaches to Analyze Immunoglobulin Repertoires

Hedda Wardemann et al.

TRENDS IN IMMUNOLOGY (2017)

Review Immunology

How B-Cell Receptor Repertoire Sequencing Can Be enriched with Structural Antibody Data

Aleksandr Kovaltsuk et al.

FRONTIERS IN IMMUNOLOGY (2017)

Article Biochemistry & Molecular Biology

Recurrent Potent Human Neutralizing Antibodies to Zika Virus in Brazil and Mexico

Davide F. Robbiani et al.

Article Biochemistry & Molecular Biology

Cytokine Activation by Antibody Fragments Targeted to Cytokine-Receptor Signaling Complexes

Srilalitha Kuruganti et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2016)

Article Biochemical Research Methods

sciReptor: analysis of single-cell level immunoglobulin repertoires

Katharina Imkeller et al.

BMC BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Tailored Immunogens Direct Affinity Maturation toward HIV Neutralizing Antibodies

Bryan Briney et al.

Article Biochemistry & Molecular Biology

Sequential Immunization Elicits Broadly Neutralizing Anti-HIV-1 Antibodies in Ig Knockin Mice

Amelia Escolano et al.

Review Immunology

Immunoglobulin isotype knowledge and application to Fc engineering

Randall J. Brerski et al.

CURRENT OPINION IN IMMUNOLOGY (2016)

Review Oncology

Human memory B cells

M. Seifert et al.

LEUKEMIA (2016)

Article Medicine, Research & Experimental

ABodyBuilder: Automated antibody structure prediction with data-driven accuracy estimation

Jinwoo Leem et al.

Article Biochemical Research Methods

Ultra-high-throughput sequencing of the immune receptor repertoire from millions of lymphocytes

Jonathan R. McDaniel et al.

NATURE PROTOCOLS (2016)

Article Biochemistry & Molecular Biology

Iterative structure-based improvement of a fusion-glycoprotein vaccine against RSV

M. Gordon Joyce et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Multidisciplinary Sciences

Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires

Brandon J. DeKosky et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

Improved prediction of antibody VL-VH orientation

Nicholas A. Marze et al.

PROTEIN ENGINEERING DESIGN & SELECTION (2016)

Article Multidisciplinary Sciences

Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity

Martin M. Corcoran et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

Iterative structure-based improvement of a fusion-glycoprotein vaccine against RSV

M. Gordon Joyce et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Genetics & Heredity

Statistical inference of a convergent antibody repertoire response to influenza vaccine

Nicolas B. Strauli et al.

GENOME MEDICINE (2016)

Article Biochemical Research Methods

Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation

Duncan K. Ralph et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Multidisciplinary Sciences

Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting

Tarik A. Khan et al.

SCIENCE ADVANCES (2016)

Editorial Material Immunology

Direct high-throughput amplification and sequencing of immunoglobulin genes from single human B cells

Rajagopal Murugan et al.

EUROPEAN JOURNAL OF IMMUNOLOGY (2015)

Review Biology

Restricted, canonical, stereotyped and convergent immunoglobulin responses

Carole J. Henry Dunand et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Biology

Inferring processes underlying B-cell repertoire diversity

Yuval Elhanati et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Biology

Assigning and visualizing germline genes in antibody repertoires

Simon D. W. Frost et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Biology

Ageing of the B-cell repertoire

Victoria Martin et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Multidisciplinary Sciences

Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles

Daniel Gadala-Maria et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Cell Biology

High-throughput pairing of T cell receptor α and β sequences

Bryan Howie et al.

SCIENCE TRANSLATIONAL MEDICINE (2015)

Article Biochemistry & Molecular Biology

PyIgClassify: a database of antibody CDR structural classifications

Jared Adolf-Bryfogle et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

B-cell repertoire responses to varicella-zoster vaccination in human identical twins

Chen Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Review Immunology

The generation of antibody-secreting plasma cells

Stephen L. Nutt et al.

NATURE REVIEWS IMMUNOLOGY (2015)

Review Immunology

Dual immunoglobulin light chain B cells: Trojan horses of autoimmunity?

Roberta Pelanda

CURRENT OPINION IN IMMUNOLOGY (2014)

Article Immunology

Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes

Christian E. Busse et al.

EUROPEAN JOURNAL OF IMMUNOLOGY (2014)

Article Biochemical Research Methods

Antibody structural modeling with prediction of immunoglobulin structure (PIGS)

Paolo Marcatili et al.

NATURE PROTOCOLS (2014)

Article Multidisciplinary Sciences

Quantifying selection in immune receptor repertoires

Yuval Elhanati et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

Structure-based approach to the prediction of disulfide bonds in proteins

Noeris K. Salam et al.

PROTEIN ENGINEERING DESIGN & SELECTION (2014)

Article Biochemistry & Molecular Biology

Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction

Kai Zhu et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2014)

Article Immunology

Differences in the composition of the human antibody repertoire by B cell subsets in the blood

Eva Szymanska Mroczek et al.

FRONTIERS IN IMMUNOLOGY (2014)

Review Immunology

IgG subclasses and allotypes: from structure to effector functions

Gestur Vidarsson et al.

FRONTIERS IN IMMUNOLOGY (2014)

Article Microbiology

Antibodies: Computer-Aided Prediction of Structure and Design of Function

Alexander M. Sevy et al.

MICROBIOLOGY SPECTRUM (2014)

Article Microbiology

Convergent Antibody Signatures in Human Dengue

Poornima Parameswaran et al.

CELL HOST & MICROBE (2013)

Article Immunology

Atypical and classical memory B cells produce Plasmodium falciparum neutralizing antibodies

Matthias F. Muellenbeck et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2013)

Article Biotechnology & Applied Microbiology

High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire

Brandon J. DeKosky et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16

Marie Pancera et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Biochemistry & Molecular Biology

IgBLAST: an immunoglobulin variable domain sequence analysis tool

Jian Ye et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Preconfiguration of the antigen-binding site during affinity maturation of a broadly neutralizing influenza virus antibody

Aaron G. Schmidt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Genetic measurement of memory B-cell recall using antibody repertoire sequencing

Christopher Vollmers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Structure-Based Design of a Fusion Glycoprotein Vaccine for Respiratory Syncytial Virus

Jason S. McLellan et al.

SCIENCE (2013)

Review Immunology

Germinal Centers

Gabriel D. Victora et al.

ANNUAL REVIEW OF IMMUNOLOGY, VOL 30 (2012)

Article Immunology

Shaping of Human Germline IgH Repertoires Revealed by Deep Sequencing

Kevin Larimore et al.

JOURNAL OF IMMUNOLOGY (2012)

Article Multidisciplinary Sciences

Cross-neutralization of influenza A viruses mediated by a single antibody loop

Damian C. Ekiert et al.

NATURE (2012)

Article Biochemical Research Methods

Counting absolute numbers of molecules using unique molecular identifiers

Teemu Kivioja et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Highly Conserved Protective Epitopes on Influenza B Viruses

Cyrille Dreyfus et al.

SCIENCE (2012)

Review Immunology

Molecular programming of B cell memory

Michael McHeyzer-Williams et al.

NATURE REVIEWS IMMUNOLOGY (2012)

Article Biochemistry & Molecular Biology

Computational Docking of Antibody-Antigen Complexes, Opportunities and Pitfalls Illustrated by Influenza Hemagglutinin

Mattia Pedotti et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2011)

Article Biochemistry & Molecular Biology

A New Clustering of Antibody CDR Loop Conformations

Benjamin North et al.

JOURNAL OF MOLECULAR BIOLOGY (2011)

Article Biochemical Research Methods

SoDA2: a Hidden Markov Model approach for identification of immunoglobulin rearrangements

Supriya Munshaw et al.

BIOINFORMATICS (2010)

Review Medical Laboratory Technology

Human Peripheral Blood B-Cell Compartments: A Crossroad in B-Cell Traffic

M. Perez-Andres et al.

CYTOMETRY PART B-CLINICAL CYTOMETRY (2010)

Review Immunology

Antibody-mediated modulation of immune responses

Falk Nimmerjahn et al.

IMMUNOLOGICAL REVIEWS (2010)

Article Medicine, Research & Experimental

Heterosubtypic neutralizing antibodies are produced by individuals immunized with a seasonal influenza vaccine

Davide Corti et al.

JOURNAL OF CLINICAL INVESTIGATION (2010)

Article Multidisciplinary Sciences

Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01

Tongqing Zhou et al.

SCIENCE (2010)

Article Biochemical Research Methods

Cloning and expression of murine Ig genes from single B cells

Thomas Tiller et al.

JOURNAL OF IMMUNOLOGICAL METHODS (2009)

Article Biochemical Research Methods

Rapid generation of fully human monoclonal antibodies specific to a vaccinating antigen

Kenneth Smith et al.

NATURE PROTOCOLS (2009)

Article Biochemistry & Molecular Biology

Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses

Jianhua Sui et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Systematic classification of CDR-L3 in antibodies: Implications of the light chain subtypes and the VL-VH interface

Daisuke Kuroda et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Toward high-resolution homology modeling of antibody Fv regions and application to anti body-antigen docking

Arvind Sivasubramanian et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

High-Throughput Sequencing of the Zebrafish Antibody Repertoire

Joshua A. Weinstein et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Antibody Recognition of a Highly Conserved Influenza Virus Epitope

Damian C. Ekiert et al.

SCIENCE (2009)

Review Immunology

Plasma cell differentiation and survival

David Tarlinton et al.

CURRENT OPINION IN IMMUNOLOGY (2008)

Article Multidisciplinary Sciences

Molecular basis for passive immunotherapy of Alzheimer's disease

Anna S. Gardberg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Immunology

Autoreactivity in human IgG+ memory B cells

Thomas Tiller et al.

IMMUNITY (2007)

Article Biochemistry & Molecular Biology

Structural basis for HIV-1 neutralization by a gp41 fusion intermediate-directed antibody

Micah A. Luftig et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Immunology

A checkpoint for autoreactivity in human IgM+ memory B cell development

M Tsuiji et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2006)

Review Immunology

Pre-BCR signals and the control of Ig gene rearrangements

JK Geier et al.

SEMINARS IN IMMUNOLOGY (2006)

Review Immunology

B cell development and receptor diversity during aging

D Allman et al.

CURRENT OPINION IN IMMUNOLOGY (2005)

Review Immunology

Peripheral development of B cells in mouse and man

R Carsetti et al.

IMMUNOLOGICAL REVIEWS (2004)

Review Immunology

A stepwise epigenetic process controls immunoglobulin allelic exclusion

Y Bergman et al.

NATURE REVIEWS IMMUNOLOGY (2004)

Article Multidisciplinary Sciences

Predominant autoantibody production by early human B cell precursors

H Wardemann et al.

SCIENCE (2003)

Article Multidisciplinary Sciences

A distinct signaling pathway used by the IgG-containing B cell antigen receptor

C Wakabayashi et al.

SCIENCE (2002)

Article Immunology

CD27: a memory B-cell marker

K Agematsu et al.

IMMUNOLOGY TODAY (2000)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)